Climate-driven permafrost thaw releases microorganisms and dissolved organic matter (DOM) into northern lakes, where their interactions with microbial communities and seasonal processes shape greenhouse gas emissions. In a factorial experiment mixing DOM and microbes from thermokarst ponds and lakes, we found that both DOM and microbial identity strongly influenced degradation. Lake microbes preferentially consumed thermokarst DOM, producing 3× more CO₂ due to low growth efficiency, while thermokarst microbes altered DOM with little CO₂ release. A survey of 40 lakes across a climate gradient showed CO₂ fluxes peaking in spring from under-ice buildup and CH₄ fluxes peaking in fall after summer accumulation. Dissolved gas concentrations served as early indicators of these events, with CH₄ linked to reduced DOM and CO₂ to multiple pathways. Overall, DOM quality, microbial traits, and seasonal dynamics interact to control lake carbon cycling, emphasizing the need for year-round monitoring under climate change.
Author Keywords: Dissolved Organic Matter (DOM), Fluxes, Fourier-transform ion cyclotron resonance mass spectrometry (FT-ICR MS), Greenhouse Gases (GHGs), Lakes, Thermokarst