DNA methylation (DNAm) is a useful indicator of phenotypic expression and diversity, and can potentially inform adaptations to environmental changes. This thesis uses epigenetic techniques to investigate the mechanisms underlying phenotypic variation in white-tailed deer, black bear, and mountain goat, with a particular focus on age and body size. In the second chapter, we aimed to contribute to wildlife monitoring by developing epigenetic clocks, or predictive models of age, and diagnostic markers of age class and sex. In the third chapter, we aimed to investigate the involvement of DNAm in body size variation of white-tailed deer by developing a model predictive of hindfoot length, and by identifying CpGs and genes that may be involved in hindfoot length variation. My results indicate that DNAm is an effective predictive marker of various phenotypes in these North American large mammals, and that epigenetic methods offer valuable insights for managing human impacts on wildlife.
Author Keywords: Age, Body Size, DNA Methylation, Epigenetics, Phenotypes, Population Genetics