Environmental and Life Sciences

A meta-analysis revealed that while there is often a greater degree of contamination of soils and sediments with metals, contamination by mercury (Hg) is a large concern owing to its toxicity at low concentrations. The case study in Guyana characterized Hg and concentrations of other metals (As, Cd, Co, Cu, Mn, Ni, Pb, and Zn) in soil and sediment within gold mined areas. Metal concentrations were low in soil and sediment of sampled gold mines, while the concentrations of Hg were much higher in soil and sediment and contamination was not localized to the mine site. Moss bags and Hg passive air samplers (MerPAS) were deployed to measure atmospheric Hg around a gold mine in Mahdia, Guyana over a 90-day period as well as a 2-day period that encompassed a periodic burn (typically 2-hr). Mercury in moss and MerPAS were positively correlated over both deployment periods, but Hg concentrations measured during the 2-day event were several-fold higher in both moss and MerPAS compared with the 90-day exposure demonstrating that most of the Hg sorbed to both moss and passive samplers is lost during periods of inactivity. Using the 2-day deployment as a conservative estimate of atmospheric Hg exposure, Hg air concentrations around the burning station exceeded 100,000 ng m-3 averaged over a 48-hr period, and moss Hg concentrations were greater than 250,000 ng g-1 around the burning station, although Hg concentrations in both media decreased rapidly with distance. Mercury concentration in soil and sediment was strongly related to organic matter content, which tended to be higher away from the mine site. These controls of organic matter (carbon; C) cycling on Hg distribution and movement are clear at sites exposed to high atmospheric Hg and exist at the global scale, although Hg:C ratios in environmental media are greatly elevated at the gold mine site compared with the global average. Locally sourced biochar did not sufficiently improve physical properties (porosity) in overburden soil, which showed the worse plant response, possibly due to the high clay content that contributes to the "baked" condition of these soils and restrict root growth.

Author Keywords: Biochar, Environmental contamination, Gold mining, Mercury, Metals, Organic matter

Access to human blood for forensic research and training in bloodstain pattern analysis (BPA) can be difficult due to many ethical, safety and cost concerns. Mammalian blood alternatives can be sourced, especially from local and willing abattoirs, but some concerns remain, and the added difficulties of high variation and species-specific differences in cellular components pose other issues. Therefore, synthetic alternatives to human blood provide practical options for the BPA community. This thesis explores the use of alginate hydrogels as a base material for forensic blood substitute (FBS) development. Hydrogels are first explored as a suitable environment for DNA stability and functionality and compared to other polymer systems. The ability of DNA to remain intact while undergoing electrospray ionization (ESI) is also investigated. The FBS design focuses on mimicking the fluid properties and genetic capabilities of whole human blood – a material not developed in FBSs previously. ESI was used to develop microparticles (MPs) that serve as cellular components of human blood (the red blood cells – RBCs, and white blood cells – WBCs). The microparticles were ionically crosslinked using calcium to provide small MPs (RBCs) or covalently crosslinked with functional DNA to provide larger WBC-like functional particles. The integration of these novel MPs into alginate-based materials is optimized and their use in BPA scenarios is explored. The FBS is tested in BPA scenarios of dripping experiments, impact patterns, and the ability to extract and amplify the contained DNA. In addition, the stability (or shelf-life) of the FBS was also assessed. The FBS exhibited similar spreading ratios to blood and demonstrated feasibility in use for impact angle (a) determination and impact pattern creation. Importantly, the DNA contained within the FBS could be processed with analogous protocols used in DNA evidence processing, enhancing its applicability to BPA research and training.

Author Keywords: Alginate hydrogels, Bloodstain pattern analysis, Electrospray ionization, Forensic blood substitutes, Forensic materials, Synthetic DNA design

Objectives/purpose: This study examined the psychosocial health (including resilience, hope, social functioning, mental wellbeing, and stress) of childhood cancer patients attending a recreational oncology camp (ROC).Methods: Childhood cancer patients enrolled for ROC participated in a survey on the first (T1) and last (T2) day of camp, and 3 months post-camp (T3). This survey included the: Child and Youth Resilience Measure (CYRM), Children's Hope Scale (CHS), Social Provisions Scale (SPS-5), and Short Warwick-Edinburgh Mental Wellbeing Scale (SWEMWBS). Afternoon saliva samples were collected at T1 and T2 to determine cortisol (ELISA). Results: CYRM, SPS-5, and SWEMWBS scores were high but did not differ between timepoints. CHS scores at T3 were lower compared to T1 and T2 (F=9.388, p=0.008). Salivary cortisol levels were within normal ranges. Conclusion/clinical implications: Childhood cancer patients have high levels of positive psychosocial variables and normal stress levels while attending ROC.

Author Keywords: cancer, children, hope, oncology camp, psychosocial health

Acoustic communication is vital for mediating interactions between individuals and their environment. From echolocating bats to isolated rodent pups, ultrasonic vocalizations are a useful mechanism for producing localized and cryptic acoustic signals. Flying squirrels have been demonstrated to produce almost exclusively ultrasonic calls which is rare in both squirrels and mammals, though the significance of this acoustic range is unknown. To investigate the context of ultrasonic calls in these gliding mammals, I created phylogenetic comparative analyses to compare ecological and morphological traits against call frequencies. I found that nocturnality, a trait entangled with gliding in squirrels, was related to higher-frequency calls. Furthermore, by comparing all gliding mammals and their non-gliding counterparts, I found that gliding mammals produce significantly higher frequencies than these relatives. This form of cryptic communication is likely used to avoid predation, which was further supported by behavioural experiments wherein flying squirrels used significantly higher frequencies when predation risk increased. While high frequency communication was used by most gliders, I found that ultraviolet-induced photoluminescence, another potential form of crypsis, was strongly associated with nocturnality, with half of the tested gliding mammals showing evidence of this unique colouration. While ultrasonic vocalizations are widespread in echolocating bats and echonavigating mammals, I did not find evidence to support echonavigation in flying squirrels. Instead, I found that ultrasonic vocalizations are used in a variety of social contexts and during solitary foraging and exploration. These combined results demonstrate the unique ecological and evolutionary pressures acting on small-bodied, nocturnal gliding taxa and the resulting cryptic behaviours and communication.

Author Keywords: communication, flying squirrels, gliding mammals, Sciuridae, ultrasound, ultraviolet-induced photoluminescence

Fungi are a diverse group of organisms that play crucial roles in various ecological processes and have immense economic importance. Understanding the intricate mechanisms underlying fungal growth and development is fundamental to harnessing their potential and exploring their applications in different fields. Signalling molecules, such as hormones, have been identified as key regulators in fungal physiology, orchestrating intricate processes and modulating biological responses to the environment. Phytohormones, commonly associated with plants, have been proposed as potential myco-hormones due to their production in a wide variety of fungi. Metabolomic analyses were performed via LC-MS/MS to investigate the role of phytohormones, specifically cytokinins (CKs) and indole-3-acetic acid (IAA), along with lipids and energetic metabolites such as organic acids during the growth and development of the model fungus Sordaria macrospora. The results revealed a clear switch between CK ribosides and CK free bases during the ascosporegenesis stage, with increased levels of cZ and iP and decreased levels of iPR and cZR. A similar pattern was observed in the mutant strain smgpi1 but demonstrating higher levels of CK free bases and increased fruiting body formation compared to the wild type. These findings provide insights into the regulation of phytohormones especially during fungal fruiting body development. In terms of IAA, the levels increased during the transition to sexual development in all strains, with the per5 mutant, unable to produce lipids via the cytosol, demonstrating a higher concentration than the wild type. The interplay between energetic metabolites and IAA suggests a potential role in the transition to sexual development. Additionally, the dose-dependent effects of exogenous CK application were investigated, showing the potential of low concentrations, from 1 to 10 μM, of CKs in promoting biomass accumulation or sexual development. Furthermore, gene editing in S. macrospora was proposed as a future direction to explore the functions of CKs and other metabolites during fungal development. Overall, this research contributes to our understanding of phytohormone-mediated processes in fungi and opens avenues for future investigations in fungal biology.

Author Keywords: fungi, LC-MS, metabolomics, myco-hormone, phytohormone, sexual development

The ᐃᓕᓕᐗᔅᑭᔾ | Ililiwaskiy (Moose Cree First Nation Territory) in Ontario's James Bay region has long faced industrial impacts on its ecosystems. Community concerns about mercury in culturally important fish prompted an interdisciplinary study bringing together chemical analysis and community knowledge. Researchers partnered with Moose Cree members through workshops, training, and interviews, while sampling over 180 fish across six sites. Walleye showed the highest mercury levels, often exceeding Health Canada's 0.5 ppm guideline for large fish and the 0.2 ppm guideline for subsistence consumers, women, and children. Community input highlighted fish as both a cultural cornerstone and food source, while noting how land-based changes have impacted fishing practices. Findings reveal elevated mercury in traditional foods and broader impacts on land-based practices and food security. The project underscores the importance of rethinking risk assessments, mitigating risks from resource extraction, water management, and supporting Moose Cree leadership in stewardship.

Author Keywords: Consumption, Cumulative effects, Fish, Indigenous knowledge, Mercury, Risk

Hybridization contributes to the genetic diversity and can impact speciation. This study investigates the genetic evidence of recent hybridization under climate change in sympatric populations of northern and southern flying squirrels in Ontario. Using low-coverage whole-genome sequences, my research examines the existing population structure and measures the genomic variation of the Glaucomys species. The global estimates of FST (0.308) and DXY (0.141) are indicative of substantial differentiation between the species. Measures of genetic diversity (π), differentiation (FST), and divergence (DXY) across the genome reveal insights into the divergent selection driving speciation. Results indicate an absence of contemporary hybridization or introgression at a site with longstanding sympatry. Across both species' genomes, signatures of selection align with four different scenarios for the formation of genomic landscapes of differentiation, shedding light on the complex speciation history of these flying squirrels. These findings enhance understanding of evolutionary dynamics, adaptation, speciation, and genetic differentiation.

Author Keywords: Genomic differentiation, Glaucomys, northern flying squirrel, southern flying squirrel, speciation

Muskrat populations are declining across North America. In recent decades, hybrid cattail Typha x glauca has been invading wetlands in North America. This invasion is degrading wetland habitat, leading to reduced interspersion of water and vegetation. Muskrats are wetland-obligates and their populations are positively linked to marsh interspersion. Therefore, muskrat populations may be declining due to the invasion of T. x glauca and subsequent reduction in interspersion. To test this hypothesis, I first sampled marshes across south-central Ontario, comparing muskrat densities with the relative frequency of T. x glauca and the degree of interspersion. Second, I measured intensity of use by muskrats in a large wetland along a gradient of interspersion. My findings suggest that reduced interspersion may be contributing to muskrat population declines, but it is unclear to what degree T. x glauca is responsible. Further research is needed to understand the effects of wetland invasions on muskrat populations.

Author Keywords: invasive species, Ondatra zibethicus, Southern Ontario, Typha x glauca, wetlands, wildlife conservation

Eutrophication is an ongoing global problem and agriculture is an important non-point source of nutrient loading. Specifically, nitrogen (N) and phosphorus (P) losses from agricultural landscapes continue to drive water quality issues. In southern Ontario, agriculture has intensified in recent decades, with major expansions of cash crop production and extensive tile drainage (TD). Through intensive monitoring of 12 tile outlets draining operational fields under the conventional corn-soybean-wheat rotation, this study examined differences in measured and volume-weighted total P, total N, and nitrate-N concentrations and loads over 28 months (October 2020- April 2023) amongst crop covers and between growing (GS; May – September) and non-growing seasons (NGS; October – April). Nitrogen concentrations (i.e., TN and NO3-N) in TD eluent were consistently high both between seasons and were found to be significantly highest from winter wheat (WW) fields in the NGS, and corn fields in the GS. Volume-weighted TP concentrations were not significantly different either amongst crop covers or between seasons, although TP losses tended to be highest from the cover crop (CC) fields in the NGS. Differences in N and P losses between years and amongst crop covers were attributed to differences in legacy soil nutrients, the establishment and decomposition of over-winter cover crops, and physical soil properties. The results of this study can inform agricultural management by addressing the urgent need for improved information around the relationship between agricultural practices and nutrient losses, especially in the NGS.

Author Keywords: Best management practices, Crop rotation, Over-winter cover crops, Seasonality, Tile drainage, Water quality

Increasing wildfire frequency, driven by climate change, can change the concentration andcomposition of dissolved organic matter (DOM) exported from land into receiving waters by removing terrestrial vegetation, changing soil hydrology, and interrupting microbial degradation. In this thesis, I tested how wildfire impacts the molecular composition and reactivity of DOM. I compared DOM from boreal headwater streams in northwestern Ontario, Canada between 10 catchments recently affected and 10 comparable catchments that were undisturbed for at least 20 years. Using optical spectroscopy, ultra-high-resolution mass spectrometry, and incubation experiments, I found that burned streams had 29% higher average DOM concentrations and contained less bioavailable DOM, which resulted in microbes respiring more CO2 in burned streams rather than using carbon to build biomass. These results indicate that the impacts of wildfire on carbon sequestration have been underestimated and highlight the need to consider wildfire in forest carbon budgets.

Author Keywords: boreal forest, carbon flux, dissolved organic matter, Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS), headwater streams, Wildfire