Graduate Theses & Dissertations

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Holocene Resource Exploitation
This study uses the zooarchaeological record to examine the range of activities represented in Late Archaic period samples excavated from Jacob's Island -1B, in the Trent-Severn Waterway region in Ontario. Radiocarbon dates from sixteen features were used to establish a chronology of site use and occupation. The faunal remains analyzed in this study were recovered from seven dated mortuary features associated with human remains. The results of the faunal analysis suggest that Canis lupus familiaris was the primary species interred at Jacob's Island-1B. Small rodents, specifically Tamias striatus were also found in high abundance and are possibly the result of natural burrowing disturbances. Red ochre staining and low levels of burning were identified. Comparisons with other contemporaneous sites in the region indicate some variation in species composition. It is suggested that Canis lupus familiaris was associated with ritual and mortuary activities at Jacob's Island-1B. Author Keywords: Canis lupus familiaris, Late Archaic Period, Ontario, Ritualsim, Zooarchaeology
Local Immigration Partnerships
Introduced as part of the Canada-Ontario Immigration Agreement, Local Immigration Partnerships (LIPs) mark a fundamental shift in local settlement policy. To address the gap in knowledge about the implications of this policy change, this thesis research features a case study of Durham Region's LIP. Objectives were designed to examine the impact of Durham's LIP by interviewing 52 key-informants within six sectors involved in settlement and integration. Findings indicate an effective application of the LIP policy with participants pointing to the LIP's vital role in bringing Welcome Centres to Durham, increasing the attention and profile of immigration issues and improving governance relations amongst different sectors in settlement and integration. A product of local circumstances, the LIP has engaged in a quasi-advocacy role educating mainstream service providers and institutions on how to respond to a diversifying population. Results contribute to the relatively under-studied but growing knowledge of the LIP policy while demonstrating that the localization of immigration policy under the appropriate terms can be successful. Author Keywords: Governance, Integration, Local Immigration Partnerships, Ontario, Regionalization, Settlement
Absorbance and Fluorescence Characteristics of Dissolved Organic Matter in North Atlantic, Pacific and Arctic Oceans
This thesis was designed to quantify absorbance and fluorescence characteristics of dissolved organic matter (DOM) in North Atlantic, Pacific and Arctic Oceans. DOM was described in water masses of distinct sources and formation pathways as well as in regions where environmental forcings such as deep water upwelling, enhanced biological activity and receipt of freshwater discharge were prevalent. Influence of sea ice on DOM in Beaufort Sea mixed layer (0 to 30 m) seawater was investigated based on sea ice extent as well as freshwater fractions of meteoric (fmw) and sea ice melt water (fsim) calculated from oxygen isotope ratio (δ18O). The effect of DOM exposure to simulated solar radiation was also assessed to determine the resilience of fluorescent fractions of DOM to photodegradation. This research aims to further our ability to trace DOM in marine environments and better understand its transformation pathways and predict its fate as part of the oceanic carbon cycle in a changing climate. Author Keywords: Absorbance, Arctic Ocean, Dissolved organic matter, Fluorescence, Parallel Factor Analysis, Sea Ice
EMPIRE AND ITS PRACTITIONERS
In 1915 U.S. Marines invaded Haiti. Driven first by the epidemiological dangers in Haiti, health and medicine was made a central tenet in administering the occupation. Useful for protecting the American Marines from disease, the Service d'Hygiene (the occupation-era Public Health Service) also served a hegemonic purpose. By bringing American biomedicine to sick Haitians, the Service d'Hygiene built support for the occupation and helped foster long-term connections between Haiti and the United States. This hegemonic drive was made possible by the incorporation of non-state actors into the colonial project. To achieve this, the American authorities forged a development strategy for Haiti that was premised upon a relationship between the state and private institutions such as the Rockefeller Foundation. This strategy also encouraged Haiti to look to the United States for support, a goal successfully realized when Haitian politicians continued to do so even after the Marines left Haiti in 1934. Author Keywords: Haiti, Hegemony, Imperialism, Public Health, Rockefeller Foundation, Service d'Hygiene
An Ecological Analysis of Late Woodland Settlement Patterns in the Rouge River Watershed, Southern Ontario
This thesis seeks to understand the influences of environmental variables on site location selection during the Late Woodland period (ca. A.D. 1000-1650) in south-central Ontario, specifically variables considered to be favourable to maize agriculture. Four analyses were undertaken: a geographic information system (GIS) comparative analysis of Late Woodland sites compared to random points; population estimates of four sites for which settlement pattern data was available; maize consumption estimates for these same sites, and; a maize resources catchment analysis of these sites. The analysis conducted did not produce conclusive results to answer questions related to maize-driven site selection, however it did show that requirements for maize resources at these sites could have been met in catchment areas of a 500 m radius, in one case in 250m. The results led to an important question for future research: if agricultural needs were not driving settlement location selection in this area, what was? Author Keywords: Environmental Modeling, GIS, Late Woodland, Maize Agriculture, Movement of Communities, Ontario Archaeology
An Investigation of the Impact of Big Data on Bioinformatics Software
As the generation of genetic data accelerates, Big Data has an increasing impact on the way bioinformatics software is used. The experiments become larger and more complex than originally envisioned by software designers. One way to deal with this problem is to use parallel computing. Using the program Structure as a case study, we investigate ways in which to counteract the challenges created by the growing datasets. We propose an OpenMP and an OpenMP-MPI hybrid parallelization of the MCMC steps, and analyse the performance in various scenarios. The results indicate that the parallelizations produce significant speedups over the serial version in all scenarios tested. This allows for using the available hardware more efficiently, by adapting the program to the parallel architecture. This is important because not only does it reduce the time required to perform existing analyses, but it also opens the door to new analyses, which were previously impractical. Author Keywords: Big Data, HPC, MCMC, parallelization, speedup, Structure
Genome annotation, gene characterization, and the functional analysis of natural antisense transcripts in the fungal plant pathogen Ustilago maydis
Ustilago maydis (DC) Corda is the causal agent of 'common smut of corn'. Completion of the U. maydis lifecycle is dependent on development inside its host, Zea mays. Symptoms of U. maydis infection include chlorosis and the formation of tumours on all aerial corn tissues. Within the tumours, thick-walled diploid teliospores form; these are the reproductive and dispersal agent for the fungus. U. maydis is the model to study basidiomycete biotrophic plant-pathogen interactions. It holds this status in part because of the completely sequenced 20.5 Mb genome; however, thorough genome annotation is required to fully realize the value of this resource. The research presented here improved U. maydis genome annotation through the analysis of cDNA library sequences and comparative genomics. These analyses identified and characterized pathogenesis-related genes, and identified putative meiosis genes. This enabled the use of U. maydis as a model for investigating 'host-induced' meiosis. Further, the cDNA library analyses identified non-coding RNAs (ncRNAs) and natural antisense transcripts (NATs). NATs are endogenous RNA molecules with regions complementary to a protein-coding transcript. Although NATs have been identified in a wide variety of mammals, plants, and fungi, very few have been functionally characterized. Over 200 U. maydis NATs were annotated by analyzing full-length cDNA sequences. NAT structural features were characterized. Strand-specific RT-PCR was used to detect NATs in U. maydis and in a related smut fungus, U. hordei. The data supported a common role for NATs in smut teliospore development, independent of the RNA interference pathway. Analysis of the expression of one U. maydis NAT, as-um02151, in haploid cells, led to a model for NAT function in U. maydis during teliospore dormancy. This model proposed NATs facilitate the maintenance of stored mRNAs through the formation of double-stranded RNA. In testing this model, it was determined that the deletion of two separate upstream regulatory regions, one of which contained a ncRNA (ncRNA1), altered NAT levels and decreased pathogenesis. These studies strengthened U. maydis as a model organism, and began the functional investigation of NATs in U. maydis, which identified a new class of fungal pathogenesis genes. Author Keywords: cDNA library analysis, genome annotation, mRNA stability, natural antisense transcripts, pathogenesis, Ustilago maydis
Abject Utopianism and Psychic Space
This dissertation utilizes the psychoanalytic theories of French psychoanalyst Julia Kristeva as a lens through which to read the novels of American author Samuel R. Delany. I argue that concepts proper to Kristeva's work--namely abjection and/or the abject--can provide a way to think what it might mean to be utopian in the 21st century. Delany's novels are received historically, which is to say his work speaks from a certain historical and cultural viewpoint that is not that of today; however, I claim that his novels are exceptional for their attempts to portray other ways of being in the world. Delany's novels, though, contain bodies, psychologies, and sexualities that are considered abject with respect to contemporary morality. Nonetheless, this dissertation argues that such manifestations of abject lived experience provide the groundwork for the possibility of thinking utopianism differently today. Throughout, what I am working toward is a notion that I call Abject Utopianism: Rather than direct attention toward those sites that closely, yet imperfectly, approximate the ideal, one should commit one's attention to those sights that others avoid, abscond, or turn their nose up at in disgust, for those are the sites of hope for a better world today. Author Keywords: Abject, Delany, Kristeva, Literary Criticism, Psychoanalysis, Utopia
Cooperation and Conflict
This study examines interaction and accommodation between Western Christians and Muslims in the Levant between the Second and Third Crusades, 1145 to 1192, examining three groups: short term crusaders, members of military orders, and permanent settlers. While members of these groups possessed several personal and group identities, most shared a prescriptive religious identity that encouraged a common goal: holy war for the protection of the Holy Land from Muslims, whom they identified as a distinct, enemy `other.' Despite these prescriptive beliefs, when Christians came into contact with Muslims, particularly following longer and more varied contact, most engaged in some convergent accommodation, such as diplomatic accommodation, development of shared languages and gestures, or admiration for chivalric qualities. Those settled in the Levant accepted the existing economic and social structures, assuming the roles of previous elites, adopting certain local customs, sharing sacred spaces, medical knowledge, or even developing personal ties with Muslims. Author Keywords: Accommodation, Christianity, Crusades, Identity, Islam
AN EXAMINATION OF THE FUNERARY OFFERINGS PLACED IN MYCENAEAN CHAMBER TOMBS DURING THE PALATIAL AND POSTPALATIAL PERIODS IN THE AEGEAN
Mortuary remains comprise a large part of the archaeological record for the Late Bronze Age in the Aegean. By the Palatial period, chamber tombs became the most common burial type on the Mycenaean Mainland, with their popularity continuing into the Postpalatial period. In addition, a single chamber tomb could be reused for as many as ten generations, resulting in large collections of burials and offerings. On account of the prolific use and reuse of chamber tombs, they provide an abundance of data for studying the mortuary rituals performed by the Mycenaeans during the Palatial and Postpalatial periods. The purpose of this study is three fold: to test the theory that the Mycenaean palatial systems influenced the types of offerings placed in the chamber tombs; to assess the validity of previously stated claims that the offerings placed in the chamber tombs represent funerary rituals, and if so, what type(s) of rituals?; and to establish whether Mycenaean mortuary archaeology is sufficiently well recorded to support a meaningful analysis of variation in funerary depositional patterning. The results of this study provide insight into the nature of the Mycenaean mortuary rituals for chamber tombs. Author Keywords: Chamber Tombs, Late Helladic, Mortuary rituals, Mycenaean, Palatial period, Postpalatial period
Purification and Identification of Selenium-containing C-phycocyanin from Spirulina
Selenium is an essential trace nutrient to many organisms, yet in high concentrations it is toxic. Organic selenium is more bioavailable to aquatic biota than inorganic selenium, but is usually found in much lower concentrations. Algae are known to biotransform inorganic selenium into several organo-selenium compounds, but it is unknown whether any of these bioaccumulate in the food chain. In this study, selenium was incorporated into the methionine residues of an algal photosynthetic protein, c-phycocyanin from Spirulina spp. The extent of selenium incorporation was quantified by inductively coupled plasma-mass spectrometry (ICP-MS), and the protein was identified using electrospray mass spectrometry (ES-MS). C-phycocyanin was isolated and purified from Spirulina with a final recovery of 20-30 % of the total c-phycocyanin present. Selenomethionine replaced 92.8% ± 1.22 of the methionine residues in c-phycocyanin when grown in 2.5 ppm sodium selenite. ES-MS was used to obtain protein spectra, and pure c-phycocyanin was identified. Data of full scans provided estimated masses of both protein subunits--α-chain measured at 18,036 Da; β-chain measured at 19,250 Da--close to the theoretical masses. Protein fragmentation by collision-induced dissociation and electron capture dissociation provided approximately 52 % amino acid sequence match with c-phycocyanin from Spirulina platensis. This study demonstrates the incorporation of selenium into an algal protein, and the identification of c-phycocyanin using electrospray ionization-mass spectrometry. Author Keywords:
THE PROPENSITY TOWARD EXTREMIST MIND-SET AS PREDICTED BY PERSONALITY, MOTIVATION, AND SELF-CONSTRUAL
ABSTRACT The Propensity Toward Extremist Mind-Set as Predicted by Personality, Motivation, and Self-Construal Nick Fauset Multivariate regression analyses were used to determine the effects of Personality (Neuroticism, Extraversion, Openness, Agreeableness, and Conscientiousness), Motivation (External, Amotivation, Intrinsic, and Identified), and Self-Construal (Independent and Interdependent) on three domains of Extremist Mind-Set (Proviolence, Vile World, and Divine Power). Participants consisted of first year undergraduate students (209 females, 76 males) enrolled in Introductory Psychology (N=279) and/or Introductory Economics (N=7), whom participated for course credit. The Motivation measure was problematic for students to complete and this variable was dropped from the model due to missing data. Decreases in Neuroticism, Openness, Agreeableeness, and Interdependent were significantly correlated with increases in Proviolence. Decreases in Agreeableness were correlated with increases in Vile World. Decreases in Openness, and increases in Agreeableness and Interdependent were significantly correlated with increases in Divine Power. These observations provide an interesting perspective on the types of Canadian undergraduate students who are more likely to score highly on measures of Extremism. Keywords: Militant Extremist Mental Mind-Set, Extremism, Personality, Five Factor Model, Motivation, Intrinsic, Extrinsic, Self-Construal, Independent, Interdependent Author Keywords: Extremism, Militant Extremist Mental Mind-Set, Motivation, Personality, Self-Construal

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Graduate student theses produced at Trent University. You may also browse theses and dissertations by year, program, or author.

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