Graduate Theses & Dissertations


Detectability and its role in understanding upland sandpiper (Bartramia longicauda) occurence in the fragmented landscape of southern Ontario
Upland Sandpipers (Bartramia longicauda), like many grassland birds, are undergoing population decline in parts of their range. Habitat fragmentation and change have been hypothesized as potential causes of decline. I used citizen-science occurrence data from Wildlife Preservation Canada’s Adopt-A-Shrike Loggerhead Shrike (Lanius ludovicianus) program in conjunction with validation surveys, using similar point-count methods, to examine detectability and determine if landscape level habitat features could predict occupancy of Upland Sandpipers in Southern Ontario. In a single season detectability study, I used Wildlife Preservation Canada’s survey protocol to determine detectability in sites that were known to be occupied. Detectability was low, with six surveys necessary to ensure detection using a duration of at least 18 minutes early in the breeding season. The proportion of open habitat did not affect detection on the landscape. Using a larger spatial and temporal scale, with five years of citizen-science data, I showed that Annual Crop Inventory data could not effectively predict Upland Sandpiper occupancy. Model uncertainty could be attributed to survey protocol and life history traits of the Upland Sandpiper, suggesting that appropriate survey methods be derived a priori for maximizing the potential of citizen-science data for robust analyses. Author Keywords: Bartramia longicauda, citizen-science, detection, landscape, occupancy, Ontario
Assessing factors associated with wealth and health of Ontario workers after permanent work injury
I drew on Bourdieu’s theory of capital and theorized that different forms of economic, cultural and social capital which injured workers possessed and/or acquire over their disability trajectory may affect certain outcomes of permanent impairments. Using data from a cross-sectional survey of 494 Ontario workers with permanent impairments, I measured workers’ different indicators of capital in temporal order. Hierarchical regression analyses were used to test the unique association of workers’ individual characteristics, pre-injury capital, post-injury capital, and the outcomes of permanent impairments. The results show that factors related to individual characteristics, pre-injury and post-injury capital were associated with workers’ perceived health change, whereas pre-injury and post-injury capital were most relevant factors in explaining workers’ post-injury employment status and income recovery. When looking at the significance of individual predictors, post-injury variables were most relevant in understanding the outcomes of permanent impairment. The findings suggest that many workers faced economic and health disadvantages after permanent work injury. Author Keywords: Bourdieu, hierarchical regression, theory of capital, work-related disability, workers with permanent impairments
Modelling the Lanthanum Aluminate-Strontium Titanate Interface with a Modified Transverse Ising Model
In 2004 it was discovered that a two-dimensional electron gas (2DEG) forms at the interface between lanthanum aluminate (LAO) and strontium titanate (STO). This 2DEG exhibits a variety of electronic and magnetic phenomena, motivating intense research into its applicability to electronic devices. Over the years several models have been developed in theoretical exploration of this system. Here, the transverse Ising model is applied to the LAO/STO interface for the first time. It is shown that the model as it is traditionally formulated cannot accurately predict the structure of the electron density at the interface. I show that this can be fixed with a simple modification of the model, and discuss how this modification affects both the polarization distribution in ferroelectric thin films and the electron density at the LAO/STO interface. The importance of including the depolarizing field when modelling spatially inhomogeneous ferroelectric systems is also explored. Author Keywords: ferroelectric thin film, lanthanum aluminate, strontium titanate, transverse Ising model, two-dimensional electron gas
third wheel
Population cycles are regular fluctuations in population densities, however, in recent years many cycles have begun to disappear. With Canada lynx this dampening has also been seen with decreasing latitude corresponding to an increase in prey diversity. My study investigates the role of alternate prey on the stability of the lynx-hare cycle by first comparing the functional responses of two sympatric but ecologically distinct predators on a primary and alternate prey. I then populated a three species predator-prey model to investigate the role of alternate prey on population stability. My results showed that alternate prey can promote stability, though they are unlikely to “stop the cycle”. Furthermore, stability offered by alternate prey is contingent on its ability to increase intraspecific competition. My study highlights that population cycles are not governed by a single factor and that future research needs to be cognizant of interactions between alternate prey and intraspecific competition. Author Keywords: alternate prey, Canis latrans, functional response, Lepus americanus, Lynx canadensis, Tamiasciurus hudsonicus
Support Vector Machines for Automated Galaxy Classification
Support Vector Machines (SVMs) are a deterministic, supervised machine learning algorithm that have been successfully applied to many areas of research. They are heavily grounded in mathematical theory and are effective at processing high-dimensional data. This thesis models a variety of galaxy classification tasks using SVMs and data from the Galaxy Zoo 2 project. SVM parameters were tuned in parallel using resources from Compute Canada, and a total of four experiments were completed to determine if invariance training and ensembles can be utilized to improve classification performance. It was found that SVMs performed well at many of the galaxy classification tasks examined, and the additional techniques explored did not provide a considerable improvement. Author Keywords: Compute Canada, Kernel, SDSS, SHARCNET, Support Vector Machine, SVM
Who Cares? Examining associations between caregiving sensitivity and parent-peer attachment
Although years of research have established that attachment representations are not consistently transmitted from parent to child (also known as the transmission gap), the reasons for this gap remain relatively unknown. This transmission gap exists between parents and peers as well. The purpose of this thesis was to examine the role of caregiving sensitivity in the relationship between parent attachment and peer attachment and to test if caregiving sensitivity helps explains the relationship between parent attachment and peer attachment. This study found support for the transmission of attachment from parent to peers, but not that caregiving sensitivity explains this transmission. Results indicate that parenting caregiving sensitivity questionnaires are inconsistent in assessing the construct of sensitivity. Parenting caregiving sensitivity questionnaires also do not measure the same concepts as peer caregiving sensitivity questionnaires. These findings suggest that assessing caregiving sensitivity in parents differently may help close the transmission gap. Author Keywords: attachment, caregiving, parenting, peer, sensitivity
Models of partitioning, uptake, and toxicity of neutral organic chemicals in fish
Models of partitioning, uptake, and toxicity of neutral organic chemicals in fish Alena Kathryn Davidson Celsie A novel dynamic fugacity model is developed that simulates the uptake of chemicals in fish by respiration as applies in aquatic toxicity tests. A physiologically based toxicokinetic model was developed which calculates the time-course of chemical distribution in four tissue compartments in fish, including metabolic biotransformation in the liver. Toxic endpoints are defined by fugacity reaching a 50% mortality value. The model is tested against empirical data for the uptake of pentachloroethane in rainbow trout and from naphthalene and trichlorobenzene in fathead minnows. The model was able to predict bioconcentration and toxicity within a factor of 2 of empirical data. The sensitivity to partition coefficients of computed whole-body concentration was also investigated. In addition to this model development three methods for predicting partition coefficients were evaluated: lipid-fraction, COSMOtherm estimation, and using Abraham parameters. The lipid fraction method produced accurate tissue-water partitioning values consistently for all tissues tested and is recommended for estimating these values. Results also suggest that quantum chemical methods hold promise for predicting the aquatic toxicity of chemicals based only on molecular structure. Author Keywords: COSMOtherm, fish model, fugacity, Partition coefficient, tissue-water, toxicokinetics
Acidification of lakes in northern Saskatchewan
The emission of acid precursors by large point sources in Western Canada (such as the Athabasca Oil Sands Region) has prompted studies into the possible impact to downwind aquatic and terrestrial ecosystems. Sensitivity of catchments to acidic deposition was estimated for the total lake population of northern Saskatchewan (n=89,947) using regression kriging. Under the Steady State Water Chemistry model, a range of 12-15% of the total catchment population was predicted to be in exceedance of critical loads under 2006 deposition levels and 6% of catchments were estimated to be very sensitive (pH below 6 and acid neutralizing capacity, alkalinity, calcium below 50 eqL-1). Temporal changes in soil and water chemistry estimated for 18 Alberta and Saskatchewan catchments using the Very Simple Dynamic and PROFILE models showed that changes in soil base saturation and lake acid neutralizing capacity between 1850 and 2100 were slight, declining 0.8% and 0.9% by 2012, respectively. Author Keywords: acidification, critical loads, exceedance, PROFILE, regression kriging, VSD
Framework for Testing Time Series Interpolators
The spectrum of a given time series is a characteristic function describing its frequency properties. Spectrum estimation methods require time series data to be contiguous in order for robust estimators to retain their performance. This poses a fundamental challenge, especially when considering real-world scientific data that is often plagued by missing values, and/or irregularly recorded measurements. One area of research devoted to this problem seeks to repair the original time series through interpolation. There are several algorithms that have proven successful for the interpolation of considerably large gaps of missing data, but most are only valid for use on stationary time series: processes whose statistical properties are time-invariant, which is not a common property of real-world data. The Hybrid Wiener interpolator is a method that was designed for repairing nonstationary data, rendering it suitable for spectrum estimation. This thesis work presents a computational framework designed for conducting systematic testing on the statistical performance of this method in light of changes to gap structure and departures from the stationarity assumption. A comprehensive audit of the Hybrid Wiener Interpolator against other state-of-the art algorithms will also be explored. Author Keywords: applied statistics, hybrid wiener interpolator, imputation, interpolation, R statistical software, time series
Near-Hand Effects and Recruitment of Visual-Tactile Bimodal Cells
Near-hand benefits are seen when individuals are able to process targets more quickly, accurately, and with greater precision when a hand is placed near, rather than far from a target. One possibility is that near-hand stimuli recruit visual-tactile bimodal cells. Research reports that placing a hand near a target delayed immediate saccade onset and speeded delayed saccade onset. Study 1 examined saccade onset to targets appearing near a real hand, a realistic fake hand, or a non-hand visual cue. Immediate saccades were facilitated and delayed saccades were slowed with a real hand in the display, in comparison to a fake hand and no-hand. To establish the link between near-hand effects and bimodal cells, Study 2 used repetitive transcranial magnetic stimulation (rTMS) to depress cortical activity in PMd. RTMS did not induce a reversal of interference induced by near-hand, congruent targets. However, a reversal of the hand effect was found in the stimulation group; a real hand in the display may delay immediate saccades and improve delayed saccades post-stimulation. This finding may double dissociate the effect of the real hand from the fake hand and may be inconsistent with the hypothesis that the hand is attracting attention. Author Keywords: multisensory integration, near-hand effects, PMd, premotor cortex, rTMS, visual-tactile bimodal neurons
Biology and Management of Stratiotes Aloides in the Trent River, Ontario
Invasive aquatic plants can create negative ecological, economic and social impacts when they displace local vegetation, interfere with shipping and navigation and inhibit water-based recreational activities. In 2008, the first North American occurrence of the invasive plant Stratiotes aloides (Water soldier) was identified in the Trent River, Ontario. This research measured offset photosynthesis and turion germination to determine the light compensation point (5.2-5.4m) and maximum depth of colonization (4-6m) for S. aloides propagules using in situ incubations and controlled growth experiments. The effects of spring and fall chemical (Diquat) and physical (hand raking) treatments on S. aloides biomass, local macrophyte recovery and community dynamics in the Trent River were also measured. The target of a 75% minimum reduction in S. aloides biomass was not attained using any of the treatment methods and no perceivable recovery of the local plant community was observed. Significant S. aloides regrowth was recorded for both treatment methods regardless of application timing. Author Keywords: herbicide, invasive species, macrophyte, photosynthesis, propagule
Real-space renormalization group approach to the Anderson model
Many of the most interesting electronic behaviours currently being studied are associated with strong correlations. In addition, many of these materials are disordered either intrinsically or due to doping. Solving interacting systems exactly is extremely computationally expensive, and approximate techniques developed for strongly correlated systems are not easily adapted to include disorder. As a non-interacting disordered model, it makes sense to consider the Anderson model as a first step in developing an approximate method of solution to the interacting and disordered Anderson-Hubbard model. Our renormalization group (RG) approach is modeled on that proposed by Johri and Bhatt [23]. We found an error in their work which we have corrected in our procedure. After testing the execution of the RG, we benchmarked the density of states and inverse participation ratio results against exact diagonalization. Our approach is significantly faster than exact diagonalization and is most accurate in the limit of strong disorder. Author Keywords: disorder, localization, real-space renormalization, strong correlations


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