Graduate Theses & Dissertations

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Characterizing the demographic history and prion protein gene variation to infer susceptibility to chronic wasting disease in a naïve population of white-tailed deer (Odocoileus virginianus)
Assessments of the adaptive potential of natural populations are essential for understanding and predicting responses to environmental stressors like climate change and infectious disease. The range of stressors species face in a human-dominated landscape, often have contrasting effects. White-tailed deer (Odocoileus virginianus, deer) are expanding in the northern part of their range following decreasing winter severity and increasing forage availability, caused by climate change. Chronic wasting disease (CWD), a prion disease affecting cervids, is likewise expanding and represents a major threat to deer and other cervids We obtained tissue samples from free-ranging deer across their native range in Ontario, Canada which has yet to detect CWD in wild populations of cervids. High throughput sequencing was used to assess neutral genomic variation and variation in the gene responsible for the protein that misfolds into prions when deer contract CWD, known as the PRNP gene. Neutral variation revealed a high number of rare alleles and no population structure, consistent with an expanding population of deer. Functional genetic variation revealed that the frequencies of variants associated to CWD susceptibility and disease progression were evenly distributed across the landscape and the frequencies were consistent with deer populations not infected with CWD. These findings suggest that an observable shift in PRNP allele frequencies likely coincides with the start of a novel CWD epidemic. Sustained surveillance of genomic and genetic variation can be a useful tool for CWD-free regions where deer are managed for ecological and economic benefits. Author Keywords: Canadian wildlife, population genetics, prion, PRNP, RADseq, ungulate
Rendering New Insights
The Upper Paleolithic sequence at Vale Boi, Portugal, represents an early example of resource intensification, for which evidence of both diet diversification and intensified utilization of faunal remains has been published. The current research project tests the hypothesis that bone grease rendering was occurring throughout the Upper Paleolithic sequence at Vale Boi. As there are various issues of equifinality which makes the identification of bone grease rendering challenging, data from experimental bone grease rendering studies were utilized. The resulting analysis demonstrated limited evidence in support of a sustained use of bone grease rendering during the Upper Paleolithic sequence. However, evidence suggested that alternate bone processing activities and discard behaviours may have been occurring at the site. This suggests that the dietary behaviours of the foragers at Vale Boi were more varied than previously hypothesized. Author Keywords: Archaeozoology, Bone Grease Rendering, Faunal Analysis, Iberia, Resource Intensification, Upper Paleolithic
Pathways to Innovation
Research and development activities conducted at universities and firms fuel economic growth and play a key role in the process of innovation. Specifically, prior research has investigated the widespread university-to-firm research development path and concluded that universities are better suited for early stage of research while firms are better positioned for later stages. This thesis aims to present a novel explanation for the pervasive university-to-firm research development path. The model developed uses game theory to visualize and analyze interactions between a firm and university under different strategies. The results reveal that as academic research signals knowledge it helps attract tuition paying students. Generating these tuition revenues is facilitated by university research discoveries, which, once published, a firm can build upon to make new innovative products. In an environment of weak intellectual property rights, moreover, the university-to-firm research development path enables firms to bypass the hefty costs that are involved in basic research activities. The model also provides a range of solution scenarios where a university and firm may find it viable to initiate a research line. Author Keywords: Game theory, Intellectual property rights, Nash equilibrium, Research and development, University to-firm research path
Biosynthesis and impact of cytokinins on growth of the oyster mushroom, Pleurotus ostreatus
The oyster mushroom, Pleurotus ostreatus, is one of the most widely cultivated edible basidiomycetes. It has gained increased attention for its economic, environmental, and medicinal properties. While a lot is known about cytokinins (CKs) and their actions at the molecular and cellular levels in plants, much less is known about the function of CKs in other kingdoms. Cytokinins, which have been detected in several fungal species, play a role in pathogenic attack against plants or during plant growth promotion by plant beneficial microbes; however, the role of CKs in fungal physiology, separate from plant associations remains largely unknown. This thesis focuses on the occurrence of fungal-derived CKs in P. ostreatus when grown in vitro as submerged or aerial mycelium. Cytokinin profiling by UHPLC-HRMS/MS revealed that P. ostreatus produces CKs and that the tRNA degradation pathway is the main source of these molecules. CK dynamics within fungal growth supported previous evidence, which suggested that tRNA degradation products have a role in the physiological development of fungi for which CKs act as fungal growth regulators. A second component of the thesis demonstrated that P. ostreatus responds to exogenous applications of aromatic and isoprenoid CKs and their effects were dependent on the dose and CK type. N6-Benzyladenine (BAP), Kinetin (KIN), N6-isopentenyladenine (iP), and trans-zeatin (tZ) bioassays revealed hormone-type responses (hormesis: biphasic response). At low doses, mycelium growth could be stimulated, whereas, at high doses only inhibitory effects were observed. This stimulation/inhibition was observed whether the measured response was an increase/decrease of aerial mycelium colony diameter, biomass accumulation or a change in mycelium morphology as compared to the controls. Results indicated there is potential to alter mycelium growth and development of P. ostreatus; thus, CKs may play the role of a “mycohormone” and may be specifically helpful for medicinal fungi by increasing growth and efficiency to produce many biologically active substances with valuable medical and environmental applications. Author Keywords: cytokinins, fungal-derived CKs, hormesis, mycelium, mycohormone, Pleurotus ostreatus
“Has anybody got my back?”
Drawing on pedagogies of care, queer pedagogy and Foucault’s concept of biopower, this critical narrative study of six women teachers at an Ontario school uses interview data to explore how teaching affects women’s bodies. Findings include the dominance of men in schools; the high rate of violence against teachers committed by students; participants’ unwillingness to show bodily discomfort to students; and the profound effect of motherhood on teaching practice. I call on educators and school administrators to embed care of students’ and teachers’ bodies into the practices of schooling. I also propose that instead of erasing teacher corporeality from classrooms, we allow students to care for teachers’ bodies as part of a healthy, reciprocal caring relationship, developing students’ and sustaining teachers’ capacity to care. Given the underrepresentation of women’s voices speaking about violence against teachers, this thesis is also a repository for women’s narrated stories of assault in Ontario schools. Author Keywords: biopedagogies, body, care, narrative inquiry, pedagogy, teacher
Trace Metal Geochemistry in Peatlands
Peatlands can be found widely across all latitudes and play a significant role in global cycles within the earth’s biosphere. The anoxic conditions in peatlands promotes the accumulation of organic matter through decreased rates of decomposition and the storage of certain elements, which have received contaminant loading over the course of human existence, with significant increases occurring during the period of industrialization. We assessed global patterns of metal enrichment in peatlands in 439 cores distributed across 5 continents and 21 countries and measured 35 elements by depth increments and by peatland type. Global patterns in enrichment factors (EF’s) were determined for all metals with the majority of metals being found to have a median EF < 2 indicating relatively minor enrichment. Principal component analysis indicated EF’s of 6 metals (Cd, Co, Cu, Ni, Pb, and Zn), 2 metalloids (As and Sb) and Se in the upper peat horizon had similar spatial patterns among peatlands and these elements had generally the highest EF’s with many cores exceeding EF >10 and some having EF values >100. Significant differences in EF’s were found for these 9 “pollution” elements by peatland type and to a greater extent by geographic region, with higher EF values typically occurring in Europe and North America. Enrichment factors for most elements exhibited weak but significant positive correlations with modelled [1850 – present] S deposition. Estimated pools for the “pollution metals” within the 0 - 40 cm depth varied considerably, with median global pools in peat ranging from 12.9 mg m-2 (Sb) to 439 mg m-2 (Zn) for these 9 metals. Climate changes presents a significant risk to global peatland geochemistry due to expected changes in hydrologic regimes, resulting in potentially increased metal mobility though drought-induced peatland acidification, with historic areas previously impacted by industrial activities presenting the greatest risk of metal release to downstream receiving environments. Using a case study, we examined the impact of simulated 30-day drought on pore water chemistry at six sites in a peatland complex in Elliot Lake Ontario that were historically impacted by uranium (U) mining activities. All sites responded similarly to simulated drought with pore water pH significantly declining. The decline in pore water pH was likely due to increasing sulphate (SO42-) concentrations, which accompanied large increases in Al, Ni, Cu, Pb, Zn, and U. Dissolved organic carbon (DOC) increased, which may further enhance Al, Cu, and U mobility as these metals are strongly complexed by organic acids. Metal partitioning (Kd) values could be significantly predicted by pH and DOC although the strength of the relationship varied considerably among sites. Multiple linear regression and the inclusion of SO4-2 improved predictions, indicating that declines in pH as a result of SO4-2 and H+ production primarily governs metals and U partitioning in peatland soils. The results from both studies show that metal enrichment in global peatlands is highly variable, with northern peatlands in industrialized areas presenting the greatest risk of metal release to downstream surface waters based on expected hydrologic impacts from climate change due to historical and on-going metal and S deposition. Author Keywords: Acidification, Climate Change, Drought, Enrichment Factors, Global, Peatlands
Exploring Characteristics of those Utilizing Different Modalities of Treatment for Substance Use Disorders
Substance use disorder (SUD) is a pervasive psychological disorder detrimentally impacting both individuals and society on a psychological, economic, and social level. The best protocol for treating SUD as well as what defines success in treatment is often debated in the research. However, researchers agree that different psychosocial factors can influence outcomes. The literature suggests that mood, dark personality traits (narcissism and psychopathy), social supports, and state of change may be associated with treatment for SUD. The current study explored whether these factors predicted the type of treatment (abstinence-based or harm reduction) individuals with SUD were in. The sample consisted of 37 participants in a 12-step abstinence-based program and 65 in a harm reduction program at a local hospital. Results indicated that those in abstinence-based groups reported significantly fewer symptoms of anxiety and depression, lower levels of narcissism and psychopathy, more social supports, and advanced stage of change in comparison to those attending a harm reduction program. In addition, depression, narcissism, and perceived social support were significant predictors of treatment group membership. These findings suggest that those involved in abstinence-based groups appear to experience overall more wellness than those in harm reduction. Although further research is needed to specify the relations among factors, this study is a step towards understanding the difference between people who utilize one program versus another. Author Keywords: Abstinence, Addiction, Harm Reduction, Personality, Treatment
Biogeography of Carabidae (Coleoptera) in the Boreal forest
Basic biogeographic information is lacking for many species, such as where species are found, and how they dispersed there. Using ground beetles collected during 2008-2015 from across northern Ontario and Akimiski Island, Nunavut, I present new information on ground beetle distribution in this eastern Nearctic boreal forest, including 2 first Canadian records, 9 first provincial and 48 first territorial records, as well as 74 new records that extend the known range of many large and common ground beetles several hundred kilometres. I used these distributions to redress the knowledge gap that includes fundamental distribution data, i.e. the Wallacean shortfall, and to inform later chapters in my thesis.In Chapter 3, I examine the range expansion pattern of Carabus granulatus, a non-native species, as it spread across northeastern North America and I provide a new range record. Northern Ontario is already under threat from non-native species entering the region and it is important to conduct studies in the region before more disturbance associated with development occurs. In Chapter 4, I examine the hypothesis that northern Ontario effectively acts as a climate plateau for poikilotherms, using the predictions from Bergmann's rule as my metric. The body length of ground beetles does not appear to change over the small temperature gradient that exists across northern Ontario latitudes, supporting the climate plateau hypothesis. In Chapter 5, I test hypotheses about dispersal mechanisms that contributed to post glacial re-establishment of ground beetles using predictions of geographic distribution patterns as metrics. I found that ground beetles were likely carried downstream by rivers which aided their dispersal northward from southern refugia. I infer from the current geographic distributions that flightless ground beetle species are still expanding their range in this boreal region. Finally, I argue that there is an urgent need for more basic research on species distributions while it is still possible in regions like northern Ontario, before increased industrial and agricultural development, and expanding resource extraction projects obliterate evidence of historic ecological processes. Author Keywords: Boreal forest, Carabidae, Coleoptera, Passive dispersal, Post-glacial distribution, Range extension
Effects of Opioids on the Development and Reproductive Capacity of Japanese Medaka, Oryzias latipes
Opioid drugs are among the microcontaminants that are discharged with domestic wastewater into the aquatic environment with the potential to affect the development and reproductive capacity of aquatic organisms. To study the effects of exposure of fish to opioid drugs, Japanese medaka (Oryzias latipes) were exposed over a full life cycle to environmentally relevant (i.e. ng/L) concentrations of two opioids, codeine and fentanyl. Acute exposure of early life stage (ELS) of medaka to codeine resulted in slightly extended times to hatch, but no increase in embryo mortalities or reduced hatching success. Chronic exposure to codeine at a nominal concentration of 25,000 ng/L over a full life cycle interfered with growth, reducing the weight of the fish at maturity. Life cycle treatments with codeine at all test concentrations resulted in a significant reduction in the number of eggs produced in reproductive trials, as well as a reduction in the numbers of mature oocytes in adult females. High treatments with codeine also increased the percentage of immature sperm cells in adult males. Life cycle exposures to codeine also resulted in reduced whole-body concentrations of several hypothalamic-pituitary-gonadal (HPG) axis hormones, including reduced levels of luteinizing hormone in male and female fish and a reduction in 11-ketotestosterone in males and 17β-estradiol in females. Fentanyl did not affect reproduction or HPG hormones at the exposure concentrations tested, but high fentanyl exposures increased the mortality rate among ELS’s of the F1 generation offspring from life cycle exposed adults. The results of this thesis contribute to the literature on the environmental impacts of microcontaminants of wastewater origin and, the potential for effects in fish exposed to opioids.Keywords: Opioids, microcontaminants, fentanyl, codeine, sexual development, reproduction. Author Keywords: codeine, fentanyl, microcontaminants, opioids, reproduction, sexual development
Mindful or Mind Full? Exploring the Associations Between Relationships, Mindfulness, and Stress
Past research has indicated a relationship between attachment and mindfulness; however, less is known about the behavioural outcomes of this relationship. The purpose of the present study was to test a new, more in-depth structural model of the relationship between attachment and mindfulness, and further explore the effects of attachment and mindfulness session type (group or individual) on attendance and willingness to continue mindfulness. As predicted, both the self and other model of attachment were positively associated with mindfulness. Surprisingly, individuals who were initially interested in the follow up sessions reported significantly more negative models of others than individuals who were not interested. For the in-person sessions, no significant differences were found for participant attendance or willingness to continue based on attachment and/or type of session. The discussion of results highlights the importance of people’s view of others for developing mindfulness traits and developing strong client-provider relationships in therapeutic and intervention settings. Author Keywords: Adult attachment, Mindfulness, Stress
Olives in the Mountains
Olives have been grown in the Mediterranean region for millennia and have been a staple crop in many of its cultures. This was never more true than during the Hellenistic (323 – 133 BC) and Roman (133 BC – AD 450) periods in the Mediterranean. This thesis examines the territory of the Roman city of Sagalassos in the region of Pisidia, modern province of Burdur, and determines if olives could have been cultivated in the territory. While there have been studies that state olives were cultivated in the territory during the Hellenistic and Roman periods, modern farmers as well as agronomic manuals state that such growth is not possible. This thesis present data that indicates that olives were grown in the territory of Sagalassos, but also examines the conditions olives require to grow and if such conditions existed in Pisidia. Through this I will be able to conclude whether the past presentation of data has does indeed prove that olives were grown within the territory of Sagalassos. Author Keywords: Agricultural Decision Making, Olives, Pisidia, Roman Agriculture, Sagalassos, Turkey
Hibernian Imagination
Artistic expressions such as writing, theatrical productions, music, and film arguably contribute to a culture’s representation of itself to the outside world. Most cultures have been either read or misread through their artistic outputs over the course of history, although the Irish culture stands as a particularly misunderstood one. Through years of colonization and rebel warfare, the country’s culture has acquired a particularly imagined depiction; violent, which through centuries has resulted in a flawed cultural imaginary today. This thesis presents this issue and proposes a means to better understand the Irish culture through a deeper understanding of the factors that have led the country’s cultural imaginary to its current misrepresentative state. Through an exploration of texts, theatre, music, and film, this thesis uncovers the factors which have led to Ireland’s current cultural depiction in hopes of creating a better understanding of the Irish culture. Author Keywords: cultural imaginary, Ireland, Irish culture, Irish stereotypes, public image, stereotypes

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Graduate student theses produced at Trent University. You may also browse theses and dissertations by year, program, or author.

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1973 - 2033
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Format: 2023/09/25

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