Graduate Theses & Dissertations


Sensitivity of Forest Soils to Acidic Deposition Downwind of an Aluminum Smelter, Kitimat, B.C.
Maximum permitted SO2 emissions from an aluminum smelter in Kitimat, B.C., increased after modernization in 2015. An increase in acidic deposition can potentially acidify forest soils. Monitoring was conducted at two long-term soil monitoring plots at near (7 km) and far (41 km) sites downwind from the smelter. Change in soil properties was assessed between 2015 and 2018: for the near plot, there was significant decrease in pH and exchange acidity; far plot soils exhibited significant decrease of base cations and exchange acidity in the 0–5 cm layer only. The average total SO42- deposition at near and far plots were estimated to be between 8.2–12.1 and 6.7–7.4 kg/ha/yr, respectively. It was concluded no soil acidification was detected. Observed changes were attributed to measured differences in organic matter, likely influenced by sampling difficulty and measurement process discrepancies. Estimated SO42- deposition levels pose no risk to soil base cation depletion. Author Keywords: acid forest soils, acidic deposition, aluminum smelter, exchangeable base cations, long-term monitoring, minimum detectable change
Self-Organizing Maps and Galaxy Evolution
Artificial Neural Networks (ANN) have been applied to many areas of research. These techniques use a series of object attributes and can be trained to recognize different classes of objects. The Self-Organizing Map (SOM) is an unsupervised machine learning technique which has been shown to be successful in the mapping of high-dimensional data into a 2D representation referred to as a map. These maps are easier to interpret and aid in the classification of data. In this work, the existing algorithms for the SOM have been extended to generate 3D maps. The higher dimensionality of the map provides for more information to be made available to the interpretation of classifications. The effectiveness of the implementation was verified using three separate standard datasets. Results from these investigations supported the expectation that a 3D SOM would result in a more effective classifier. The 3D SOM algorithm was then applied to an analysis of galaxy morphology classifications. It is postulated that the morphology of a galaxy relates directly to how it will evolve over time. In this work, the Spectral Energy Distribution (SED) will be used as a source for galaxy attributes. The SED data was extracted from the NASA Extragalactic Database (NED). The data was grouped into sample sets of matching frequencies and the 3D SOM application was applied as a morphological classifier. It was shown that the SOMs created were effective as an unsupervised machine learning technique to classify galaxies based solely on their SED. Morphological predictions for a number of galaxies were shown to be in agreement with classifications obtained from new observations in NED. Author Keywords: Galaxy Morphology, Multi-wavelength, parallel, Self-Organizing Maps
Selection on functional genes across a flying squirrel (genus Glaucomys) hybrid zone
While hybridization between distinct taxa can have undesirable implications, it can also result in increased genetic variability and potentially, the exchange of adaptive genes or traits. Adaptive variation acquired through introgressive hybridization may be particularly advantageous for species facing rapid environmental change. I investigated a novel, climate change-induced hybrid zone between two flying squirrel species: the southern (Glaucomys volans) and northern (G. sabrinus) flying squirrel. I was interested in the occurrence of hybridization and introgression, the type of selective pressures maintaining the hybrid zone and the potential for adaptive introgression. I found relatively low hybridization and introgression frequencies (1.7% and 2.9% of the population, respectively) and no evidence of selection on hybrids or backcrosses in particular environments. I conclude that the data are more consistent with a hybrid zone maintained by endogenous (environment-independent) selection. I tested for adaptive introgression using two functional genes: IGF-1 and CLOCK. I documented intermediate functional allele frequencies in backcrosses compared to parental populations, suggesting the alleles do not confer fitness advantages in backcrosses. Despite lack of evidence for current adaptive introgression, genetic admixture between G. volans and G. sabrinus may provide adaptive potential should these species face more rapid or drastic environmental change in the future. Author Keywords: adaptive introgression, flying squirrel, Glaucomys sabrinus, Glaucomys volans, hybridization, introgression
Securitization, Borders, and the Canadian North
Canada takes a national approach to border management. While this ensures that security practices are consistent across the country, it also fails to consider that different regions in Canada may have their own border needs. This dissertation, therefore, seeks to determine if border management priorities in Northern Canada are the same as in Southern Canada, along the 49th parallel. To make this determination, three sets of federal government documents are analyzed. First, documents associated with the current Beyond the Border Action Plan are explored to better understand security priorities and if regions are considered. Next, documents that are associated with Northern security and regional governance are analyzed in order to illuminate regional security issues and determine where borders fit within this narrative. The final set of documents to be examined are Senate reports on Northern security, as they can provide a glimpse into how regional security agendas are set. Grounded theory is used to illicit key themes from all documents and political discourse analysis is applied to the Senate reports to assess the strength of securitizing arguments for the region. Securitization theory and the Copenhagen School’s five security sectors are used to frame the analysis. This approach allows for a more comprehensive understanding of the region’s security priorities and the extent of the interplay between the sectors. The concept of regional security complexes is also addressed to determine the extent to which bilateral border cooperation exists in the North. Analysis reveals that border security priorities are not the same in the North as they are in the South. For example, in the North, greater emphasis is placed on protecting maritime borders, whereas in the South, land and air borders are prioritized. Beyond the Border aligns more closely with the needs of the Southern border, thus leaving a policy and security gap in the North. Bilateral border and security cooperation are also much more prevalent in the South than in the North. This research concludes with three policy suggestions to close this gap and addresses the extent to which it is in Canada’s interest to work more closely with the United States in the North. Author Keywords: Arctic, Borders, Canada, Policy, Regions, Securitization theory
Seasonal variation in nutrient and particulate inputs and outputs at an urban stormwater pond in Peterborough, Ontario
Stormwater ponds (SWPs) are a common feature in new urban developments where they are designed to minimize runoff peaks from impervious surfaces and retain particulate matter. As a consequence, SWPs can be efficient at retaining particle-bound nutrients, but may be less efficient at retaining nutrients that are present primarily in the dissolved form, like nitrogen (N). However, the forms of nutrients (e.g. particulate vs. dissolved) likely differ with hydrologic and seasonal conditions and few studies have examined year-round differences in nutrient forms and concentrations at urban SWPs. In order to contrast total suspended solids (TSS), phosphorus (P) and nitrogen (N) levels between low and high flow conditions, sampling was conducted at an urban SWP in Peterborough, ON between November 2012 and October 2013. Only an increase in TSS levels at the outflow between low and high flow conditions was observed, as well as a decrease in TSS levels at the outflow compared to Inflow 1 under low flow conditions. Nitrate-N (NO3-N) was the dominant form of N entering the pond under all flow conditions, whereas the fraction of total-P (TP) that was particulate increased under high flow conditions. Nevertheless, the dissolved fraction of TP was consistently high in these urban inlets. Only NO3-N was significantly greater in the inflows than outflow and only under low flow conditions. Increases in the proportions of organic-N and ammonium-N in the outlet suggest that biological processing is important for N retention. Author Keywords: nitrogen, Ontario, phosphorus, stormwater ponds, total suspended solids
Seasonal habitat use and movement of native brook trout (Salvelinus fontinalis) in urban headwater streams
Coldwater streams are becoming increasingly impacted due to urbanization. Using environmental surveys, mark-recapture and telemetry, I assessed factors influencing seasonal brook trout (Salvelinus fontinalis) habitat use and movement in urban headwater streams in central Ontario between 2017-18. Generalized additive models were used to assess which habitat variables best explained seasonal yearling and older brook trout abundance, while generalized least squares models were used to assess overall trends in radio-tagged brook trout movement. My research demonstrated dynamic patterns in habitat use and movement by urban stream-dwelling brook trout. Yearlings were primarily influenced by water quality (stream temperature, conductivity), while older brook trout were most strongly influenced by stream morphology (depth, undercut bank). Movement occurred disproportionately around the spawning season and was more limited in the smaller, more altered stream. These findings may be used to inform fisheries managers on crucial timing and location of brook trout habitat refugia within urbanized environments. Author Keywords: Brook trout, coldwater stream, groundwater, habitat use, radiotelemetry, urbanization
Scripted Sexual Beliefs and Behaviours
Sexual script theory suggests that sexual behaviours have social meaning, and that individuals perceive certain behaviours as normative and expected. Previous research has indicated that there is a common belief in a cultural sexual script for (hetero)sexual behaviour sequences (CSSHS). Study 1 compared perceived norms with behaviours in first ever penile-vaginal intercourse (PVI) sex events, as well as first and recent events with most recent partners. Many participants reported the CSSHS as typical, but few reported personal experiences that followed the CSSHS. Script adherence was not strongly related to physical pleasure. Study 2 found that committed relationships predicted greater female pleasure in first ever PVI sex. This link was mediated by communication during sexual activity. Results are discussed in the context of sexual script theory. Findings suggest that common scripted assumptions regarding PVI sex events should be reviewed for their value and representation of norms. Author Keywords: female pleasure, first sexual experiences, penile-vaginal intercourse, perceived norms, sexual behaviours, sexual script theory
Scientificity of Psychology and the Categorical Paradigm of Mental Illness
There is little research devoted to exploring psychology's historical and discursive development. Psychological knowledge is generally presented as the contributions of individuals, but without context. The social, political, and economic aspects of psychology's development are scarcely discussed, including how the discipline came to be considered a science. This thesis project explored the history of the development of psychology. Specifically, psychology's claim to scientificity via the appropriation of the medical model of disease, and accordingly, the instantiation of the categorical paradigm of mental illness were examined. The discontinuous events that shaped psychology and its hallmark of scientificity were explored, including extensive concept transformations, political agendas, and marketing strategies. These practices were then explored in a practical way using the conception of clinical depression and the role of antidepressants as the first-line treatment for depression in the USA. This exploration revealed psychology's socio-historical contingencies and its agenda of prediction and control. Author Keywords: Categorical Paradigm, Concept Transformations, Historicity, Knowledge Products, Psychology, Scientificity
Scarring, sex assignment, and sex-specific sociality of Indo-Pacific humpback dolphins (Sousa chinensis) in the Pearl River Estuary and eastern Taiwan Strait
The Pearl River Estuary (PRE) and eastern Taiwan Strait (ETS) populations of Indo-Pacific humpback dolphins (Sousa chinensis) contain ~600 and 100 catalogued individuals, respectively. Population demography is important for conservation actions but few animals have been sexed by conventional methods. Longitudinal analysis of tooth-rake scars on dorsal fins showed scars disappear within 7 months; sexing adults by scarring is likely not impacted by juvenile scarring. Using dorsal fin photographs, sex assigned for 87% of catalogued PRE adults (n=300) and for 93% of ETS adults (n=60), using scars hypothesized from male-male competition, was in concordance with sex assigned by DNA, calf association, and ventral photographs. Scarring was higher in presumed males than females and in PRE females than ETS females. Female:male sex ratios were 3:2 (PRE) and 2:1 (ETS), though this likely results from biases in photo-identification methods. Social analysis with presumed sexes showed strong female-female associations in both populations but stronger female-male and male-male associations in PRE. These results support sex differentiation by scarring, which was a non-invasive approach, and sex assignment for many PRE and ETS individuals. Author Keywords: Indo-Pacific humpback dolphins, photo-identification, scarring, sex differentiation, sexes, social structure
Sacred Space, Ancestors, and Authority
The Middle Formative Period (1000 – 400 B.C.) has increasing become recognized as a critical locus in the development of Lowland Maya socio-political complexity. This period witnessed the founding of numerous ceremonial centers, substantial material cultural innovation, and the advent of mortuary practices indicating developing social differentiation. Recent excavations at the site of Ka’Kabish in Northern Belize have uncovered evidence significantly strengthening this view. Excavations underlying Plaza D-South at Ka’Kabish have revealed a series of bedrock-hewn pits containing offering caches of thousands of shell beads, forty-seven greenstone objects, and extensive ceramic evidence indicating communal ritual and feasting, which is argued by the author to represent a cosmographic diorama of the cave-riddled Underworld. Significantly, this elaborate cosmographic offering event appears to center on the secondary, bundled bedrock-cist burial of an important personage and/or ancestor who is accompanied by a number of finely crafted jade ornaments representing motifs and forms that have previously been interpreted as symbols of authority, rulership, and divine kingship. Comparable contemporary evidence from Northern Belize and beyond has been interpreted through models foregrounding site-founding, place-making, ancestor veneration, and aggrandizer driven social differentiation. By integrating and contrasting these existing models with new evidence from Ka’Kabish, this thesis argues that the mortuary, caching, and architectural practices evidenced at Middle Formative Ka’Kabish represent a glimpse into the incipience of the ideological complex, the socio-cultural processes, and the material manifestations propagating the development of subsequent Maya socio-political complexity, specifically the institution of divine kingship or ch’uhul ahau. Author Keywords: ancestor veneration, ancient Maya, greenstone cache, Ka’Kabish, Belize, Middle Formative, socio-political complexity
Habitat loss and fragmentation can disrupt population connectivity, resulting in small, isolated populations and low genetic variability. Understanding connectivity patterns in space and time is critical in conservation and management planning, especially for wide-ranging species in northern latitudes where habitats are becoming increasingly fragmented. Wolverines (Gulo gulo) share similar life history traits observed in large-sized carnivores, and their low resiliency to disturbances limits wolverine persistence in modified or fragmented landscapes - making them a good indicator species for habitat connectivity. In this thesis, I used neutral microsatellite and mitochondrial DNA markers to investigate genetic connectivity patterns of wolverines for different temporal and spatial scales. Population genetic analyses of individuals from North America suggested wolverines west of James Bay in Canada are structured into two contemporary genetic clusters: an extant cluster at the eastern periphery of Manitoba and Ontario, and a northwestern core cluster. Haplotypic composition, however, suggested longstanding differences between the extant eastern periphery and northwestern core clusters. Phylogeographic analyses across the wolverine's Holarctic distribution supported a postglacial expansion from a glacial refugium near Beringia. Although Approximate Bayesian computations suggested a west-to-east stepping-stone divergence pattern across North America, a mismatch distribution indicated a historic bottleneck event approximately 400 generations ago likely influenced present-day patterns of haplotype distribution. I also used an individual-based genetic distance measure to identify landscape features potentially influencing pairwise genetic distances of wolverines in Manitoba and Ontario. Road density and mean spring snow cover were positively associated with genetic distances. Road density was associated with female genetic distance, while spring snow cover variance was associated with male genetic distance. My findings suggest that northward expanding anthropogenic disturbances have the potential to affect genetic connectivity. Overall, my findings suggest that (1) peripheral populations can harbour genetic variants not observed in core populations - increasing species genetic diversity; (2) historic bottlenecks can alter the genetic signature of glacial refugia, resulting in a disjunct distribution of unique genetic variants among contemporary populations; (3) increased temporal resolution of the individual-based genetic distance measure can help identify landscape features associated with genetic connectivity within a population, which may disrupt landscape connectivity. Author Keywords: conservation genetics, Holarctic species, landscape genetics, peripheral population, phylogeography, wolverine
SPAF-network with Saturating Pretraining Neurons
In this work, various aspects of neural networks, pre-trained with denoising autoencoders (DAE) are explored. To saturate neurons more quickly for feature learning in DAE, an activation function that offers higher gradients is introduced. Moreover, the introduction of sparsity functions applied to the hidden layer representations is studied. More importantly, a technique that swaps the activation functions of fully trained DAE to logistic functions is studied, networks trained using this technique are reffered to as SPAF-networks. For evaluation, the popular MNIST dataset as well as all \(3\) sub-datasets of the Chars74k dataset are used for classification purposes. The SPAF-network is also analyzed for the features it learns with a logistic, ReLU and a custom activation function. Lastly future roadmap is proposed for enhancements to the SPAF-network. Author Keywords: Artificial Neural Network, AutoEncoder, Machine Learning, Neural Networks, SPAF network, Unsupervised Learning


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