Graduate Theses & Dissertations


Investigation of Air Recirculation and Thermal Efficiency within a Climate Controlled Passage
Historically, entrances have been used for passage between two separate temperature environments, such as moving from inside to outside of a building. Energy loss through entrances is a cause for concern, as it has been known to increase energy consumption to replace the lost energy; and with the exchange of air masses and cold air entering the building, human discomfort may occur. In this research, thermal efficiency and air circulation within a Conventional Entrance (CE) and Climate Controlled Passage (CCP) are compared. A small scale model of the CE and CCP was constructed to examine forty-eight energy exchange conditions, emulating those found through an entrance between a temperature controlled lab and the model. Instruments such as a power meter, a flow explorer laser Doppler anemometer, and thermocouples were used to measure and compare the energy consumption, velocity vectors, and temperature energy within the entrance. Results indicate that the CCP did retain thermal energy compared to the CE. The CE developed sloped isotherm lines and air flow that enabled and maintained thermal exhaust. Conversely, the CCP developed horizontal isotherm lines and a two-layer density current to recirculate and retain thermal energy. The research demonstrates that it is possible to increase energy efficiency of entrances in many applications. Author Keywords: Air Recirculation, Building, Entrance, Oven, Thermal Energy Efficiency, Two-layer Density Current
Breeding Phenology and Migration Habits of Whimbrel (Numenius phaeopus) in the Hudson Bay Lowlands, Canada
Understanding breeding and migration habits of Whimbrel (Numenius phaeopus) in the Hudson Bay Lowlands is important for the conservation of this population. I monitored Whimbrel at two breeding sites: the Churchill region of Manitoba and Burntpoint, Ontario. Annual average nest initiation timing was highly variable and successful nests were initiated significantly earlier than those that failed. Although nests were initiated significantly earlier at Burntpoint than Churchill, annual nest success quantified in program R MARK was similar across sites. Observed nest success rates were lower than historical records and most failure was due to predation. Annual nest survival varied widely and I used a generalized linear model to relate annual nest survival to annual average weather conditions. I observed weak relationships between annual nest survival and weather conditions in the northbound staging grounds. I tracked post-breeding migratory movements using the MOTUS radio telemetry system and observed consistent use of the mid-Atlantic coast of the United States during migration, especially among birds emerging from Churchill. In Burntpoint, I observed more variability in post-breeding migratory trajectories and significantly earlier post-breeding departure as compared to Churchill. The results of my study suggest differences in breeding and migration habits exist across nearby breeding populations, indicating that there is a need for population-specific conservation approaches for this declining species. Author Keywords: Migration, Movement Ecology, Nesting Ecology, Nest Success, Shorebird conservation, Whimbrel
Phosphorus delivery in the Rainy-River Lake of the Woods Watershed
Lake of the Woods (LOW) is a large international waterbody which suffers from frequent and widespread algae blooms. Previous studies have highlighted the importance of the lake's largest tributary, the Rainy River (RR) and its significance in total phosphorus (TP) delivery to the LOW. Unfortunately, little is known about TP contributions from the RR and its tributaries within the Canadian portion of the watershed. This thesis examines patterns and sources of TP from four tributaries on the Canadian side of the lower RR region, two of which are predominantly natural, and two that are predominantly agricultural. Relationships between water quality parameters, land use and geologic characteristics were observed over a complete hydrologic year (Oct 1, 2018 - Sept 31, 2019), and through an intensive sampling campaign using a nested watershed approach during the spring high flow and summer low flow periods. Results revealed that TP and total suspended sediment (TSS) concentrations (>100 µg/L and >20 mg/L respectively), and loads (>20 kg/km2 and >3500 kg/km2, respectively), were greater at agricultural sites compared with natural sites (<65 µg/L TP and <15 mg/L TSS concentration, and <20 kg/km2 TP and <4000 kg/km2 TSS export). Total P, TSS, Fe, and Al were significantly positively correlated (R2= 0.26-0.59; p<0.05) and intensive sampling revealed that these relationships were strongest during the spring and at the agricultural sites (R2= 0.73-0.98; p<0.05). In contrast, the summer intensive sampling revealed that TP and redox sensitive Fe were significantly correlated (R2= 0.72; p<0.005), whereas redox insensitive Al and TSS were not, suggesting TP may be sourced via redox processes in the summer due to favourable hydrologic conditions. This was observed not only at sites with high wetland influence, but also at sites with more agricultural presence suggesting that redox sourced TP may also originate from mineral stream bed sediment during low flow periods. This research suggested two primary TP sources in the lower RR region: erosion in the spring, and redox processes (internal release) in the summer. It is recommended that intensive monitoring continue in Canada, and further research be conducted to fully understand the significance of internal P release in the tributaries. Author Keywords: erosion, land use, nutrients, particulates, redox, water quality
Evaluation of silver nanoparticles (AgNPs) and anti-GD2-AgNP antibody-drug conjugates as novel neuroblastoma therapies
Neuroblastoma (NB) has one of the highest mortality rates in pediatric oncology due to relapsed and refractory disease. Current aggressive multi-modal treatments are inhibited by dose-limiting toxicities and are associated with late-effects and secondary malignancies, emphasizing the necessity for novel therapeutics. Uniquely, most NB cells highly express disialoganglioside (GD2) a cell surface glycolipid that can provide a target for tumour-specific delivery. This study demonstrates a comprehensive evaluation of silver nanoparticles (AgNPs) and the first preliminary evaluation of anti-GD2-AgNP antibody-drug conjugates (ADCs) against NB in vitro. This present study validates the potential for AgNPs as an anti-cancer agent against NB as AgNPs demonstrated preferential toxicity towards NB cells through metabolic inhibition and indicative morphological alterations, while a less tumorigenic cell line demonstrated resistance to AgNP treatment. Therefore, this work identified an AgNP cell-type-dependent cytotoxicity effect. Low conjugation efficiency of the anti-GD2 monoclonal antibody, 14.G2a, to NHS-activated AgNPs failed to exert greater toxicity than the AgNPs alone. Collectively, this thesis provides novel information regarding the anti-cancer effects of AgNPs against NB with recommendations for anti-GD2-AgNP ADCs. Author Keywords: ADC, Chemotherapy, GD2, Neuroblastoma, Silver nanoparticles
Corticosterone Promotes Development of Cannibalistic Morphology and Inhibits Tissue Regeneration in Axolotls (Ambystoma mexicanum)
Salamanders are capable of tissue regeneration throughout all life-stages, which requires the dedifferentiation of mature cells to regrow lost tissues. Dedifferentiation is promoted by degradation of the extracellular matrix by matrix metalloproteases, as well as lysosomal degradation of intracellular and cell-surface proteins that mark cells as part of a mature lineage. Salamanders are also capable of developing cannibalistic phenotypes, plastic traits that are elicited by environmental stressors that result in elevated circulating glucocorticoid (e.g., corticosterone) levels that underlie many fundamental adaptive changes in morphology. Interestingly, the direct effect of corticosterone on regeneration and the cannibalistic phenotype have yet to be examined. In the present thesis, axolotls (Ambystoma mexicanum) were exposed to exogenous corticosterone and 50% of the distal tail tissue was removed. The effects of high corticosterone levels on matrix metalloprotease (MMP-2, MMP-9) and lysosomal acid phosphatase (LAP) activity were assessed; these are two classes of enzymes which are markers of extracellular matrix and intracellular remodeling during regeneration, respectively. We found that elevated corticosterone levels inhibited tissue regeneration, by prolonging the dedifferentiation phase as indicated by increased LAP and reduced MMP-2 and MMP-9 activity. Elevated corticosterone levels also promoted the cannibalistic morphology and this effect was strongest among smaller individuals. Author Keywords: amphibian, cannibalistic morphology, corticosterone, dedifferentiation, regeneration, stress
I investigated the impact of beef-cattle farm management on the reproductive success of Bobolink (Dolichonyx oryzivorus) and Eastern Meadowlark (Sturnella magna) within Eastern Ontario. I monitored rotational grazing management regimes and hay cut dates while assessing breeding phenology and reproductive success of Bobolinks and Eastern Meadowlarks. In pasture paddocks the major factor determining Bobolink reproductive success was the date that cattle entered a paddock to graze, with earlier entries resulting in lower reproductive success. On a landscape scale, within a series of paddocks grazed by a single herd, as the number of paddocks grazed during the nesting season increased, the number of Bobolinks that reproduced successfully decreased. Experimental quantification of trampling showed that cattle exposure to clay pigeon targets, regardless of stocking rates, resulted in the majority of targets being trampled. In hayfields associated with beef- cattle operations, grassland birds had a higher likelihood of success when cutting occurred after 4 July. The best method to improve the reproductive success of Bobolinks and Eastern Meadowlarks is to leave some hayfields and pasture paddocks undisturbed until nesting is complete. Author Keywords: Bobolink, Dolichonyx oryzivorus, farm management, hayfield, pasture, rotational grazing
Passage population size, demography, and timing of migration of Red Knots (Calidris canutus rufa) staging in southwestern James Bay
Many shorebirds rely on small numbers of staging sites during long annual migrations. Numerous species are declining and understanding the importance of staging sites is critical to successful conservation. We surveyed endangered rufa Red Knots staging in James Bay, Ontario during southbound migration from 2009 to 2018. We used an integrated population model to estimate passage population size in 2017 and 2018 and found that up to 27% of the total rufa population staged in James Bay. We also extended the model to incorporate age composition of the passage population. In future applications, this method could improve our understanding of the role of breeding success in population declines. We then estimated annual apparent survival from 2009 to 2018. Survival remained near constant, though lower than estimated elsewhere in the Red Knot range, which may reflect higher permanent emigration rates rather than truly lower survival. This work demonstrates that this northern region is a key staging site for endangered Red Knots and should be included in conservation planning. Author Keywords: integrated population model, mark-recapture, migratory stopover, shorebirds, species at risk, survival
Exonic Trinucleotide Microsatellites
Trinucleotide repeats (TNRs) are a class of highly polymorphic microsatellites which occur in neutral and non-neutral loci and may provide utility for individual- and population-identification. Exonic trinucleotide motifs, in particular, offer additional advantages for non-human species that typically utilize dinucleotide microsatellite loci. Specifically, the reduction of technical artifacts, greater separation of alleles and greater specificity of amplification products leading to more efficient multiplexing and cross-taxa utilization. This study aims to identify and characterize polymorphic trinucleotide repeats and conserved primer sequences which are conserved across Cervidae (deer) species and their potential for individual identification in forensic wildlife investigations. Chapter one provides a broad introduction to trinucleotide microsatellites, chapter two deals with data-mining TNRs and chapter three applies the identified TNRs as genetic markers for individual identification. Results demonstrate proof-of-concept that exonic TNRs are capable of giving random match probabilities low enough to be employed in individual identification of evidentiary samples. Author Keywords: DNA typing, Exons, Genetic Markers, Individual Identification, Trinucleotide, Wildlife Forensics
An Assessment of Spatial Trends in the Accumulation of Oil Sands Related Metals in the Clearwater River Valley and Temporal Trends in Six Northern Saskatchewan Lakes
The objective of this thesis was to assess current spatial trends and historic trends in the accumulation of trace metals related to the Athabasca Oil Sands Region (AOSR). The AOSR hosts some of the largest industrial developments in Canada, yet relatively little is known about the transport and fate of trace metal emissions from the region – particularly in the relatively remote areas to the east of the AOSR. Lichens are widely used as biomonitors and are employed in this thesis to assess the range of metals deposition within the Clearwater River and Athabasca River Valleys. Lake sediment cores can retain a historical record of the long-range transport and deposition of metals but can also respond to large regional metal emissions sources. This thesis used lake sediment cores to assess temporal trends in metals accumulation in six road accessible lakes in NW Saskatchewan that are likely to be used by local residents. Results show that metal concentrations (V, Co, Cu, Ni, Pb, Zn, Zr and Cd ) in lichen decline exponentially with distance from the AOSR and approach background levels within a few kilometers . Results from lake sediment cores show that there was no evidence that metal concentrations had increased due to industrial activities in the AOSR. Author Keywords: Air Emissions, Lakes, Lichens, Oil Sands, Saskatchewan, Trace Metals
An Investigation of Rare Earth Element Patterns and an Application of Using Zn and Cd Isotope Ratios in Oysters to Identify Contamination Sources in an Estuary in Southern China
Environmental monitoring and investigation of metal biogeochemical cycling has been carried out in the Pearl River Estuary (PRE), an important and complex system in Southern China. In this study, rare earth element (REE) patterns as well as isotope ratios (i.e., Zn and Cd) were evaluated as tools to identify contamination sources in environmental compartments (i.e., water and suspended particles (SP)) as well as in oysters collected from estuarine sites. Results show elevated concentrations (also called anomalies) of Pr, Nd, Dy and Ho, relative to other REE elements, in water samples, potentially from REE recycling and other industrialized activities in this area. Unlike water samples, no REE anomalies were found in SP or oysters, suggesting that the dominate REE uptake pathway in oysters is from particles. Secondly, site to site variations in Zn isotope ratios were found in water and SP, showing the complexity of the source inputs in this area. Also, in estuarine locations, larger spatially differences in Zn isotope ratios were found in water collected in wet season than those in dry season, which may due to mixing of different source inputs under the water circulations in different seasons. A series of laboratory experiments were conducted during which changes in Zn isotope ratios were measured during uptake under varying salinity and Zn concentrations and during depuration. Neither in vivo Zn transportation among the various tissues within the oysters nor water exposure conditions (i.e., different salinities or Zn concentrations) caused Zn isotopic fractionation in the oysters. Cd and Zn isotope ratios were also determined in oysters obtained from the PRE. Large variations in Cd and Zn isotope ratios suggest that oysters were receiving contaminants from different input sources within the PRE. A consistent difference (approximately 0.67‰) was observed for Zn isotope ratios in oysters collected from the east side of the PRE compared to those from sampling locations on the western side of the PRE, suggesting different Zn sources in these two areas. Ultimately, by combining biogeochemistry with physiology, this study represents a first attempt to assess pollution status, monitor contaminants using oysters and model/identify contamination sources using both REEs and metal isotope ratios. Author Keywords:
Population Genetics and Scarification Requirements of Gymnocladus dioicus
The Kentucky coffee tree (Gymnocladus dioicus) is an endangered tree species native to the American Midwest and Southwestern Ontario. Significant habitat loss and fragmentation due to agricultural, industrial and urban development has caused gradual decline across its native range. The aims of this study were to investigate: (1) patterns of genetic diversity and, (2) genetic differentiation (3) relative levels of sexual vs. clonal reproduction, and (4) potential for reduced genetic diversity at range edge for wild G. dioicus populations. An analysis of variation at nine microsatellite loci from populations in the core of the species distribution in the U.S.A. and 4 regions of Southwestern Ontario indicated that G. dioicus has remarkably high genetic similarity across its range (average pairwise FST= 0.05). Germination trials revealed that the seed coats require highly invasive treatments (e.g. 17.93 mol/L H2SO4) to facilitate imbibition, with negligible germination observed in treatments meant to emulate prevailing conditions in natural populations. Low levels of sexual reproduction, high genetic similarity, and habitat degradation are issues that exist across the entire native range of G. dioicus. Author Keywords:
Mutation of the B10 Tyrosine and E11 Leucine in Giardia intestinalis Flavohemoglobin
The flavohemoglobin in Giardia intestinalis (gFlHb) is the only known protozoan member of a protein class typically associated with detoxifying nitric oxide (by oxidation to nitrate) in bacteria and yeast. Mutants of the B10 tyrosine (Y30F) and E11 leucine (L58A), conserved residues thought to influence ligand binding, were expressed and studied using Resonance Raman (RR) spectroscopy. In the wild type protein, RR conducted using a carbon monoxide probe detects two distinct Fe-CO stretches associated with two different active site configurations. In the open configuration, CO does not interact with any polar side chains, while in the closed configuration, CO strongly interacts with one or more distal residues. Analysis of the Y30F mutant provided direct evidence of this tyrosine’s role in ligand stabilization, as it had only a single Fe-CO stretching mode. This stretching mode was higher in energy than the open conformer of the wild type, indicating a residual hydrogen bonding interaction, likely provided by the E7 glutamine (Q54). In contrast the L58A mutant had no effect on the configurational nature of the enzyme. This was unexpected, as the side chain of L58 sits atop the heme and is thought to regulate the access of distal residues to the heme-bound ligand. The similar spectroscopic properties of wild type and L58A suggest that any such regulation would involve rapid conformational dynamics within the heme pocket. Author Keywords: B10 Tyrosine, Catalytic Globin, E11 Leucine, Flavohemoglobin, gFlHb, Giardia intestinalis


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