Graduate Theses & Dissertations

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Historic Magnetogram Digitization
The conversion of historical analog images to time series data was performed by using deconvolution for pre-processing, followed by the use of custom built digitization algorithms. These algorithms have been developed to be user friendly with the objective of aiding in the creation of a data set from decades of mechanical observations collected from the Agincourt and Toronto geomagnetic observatories beginning in the 1840s. The created algorithms follow a structure which begins with pre-processing followed by tracing and pattern detection. Each digitized magnetogram was then visually inspected, and the algorithm performance verified to ensure accuracy, and to allow the data to later be connected to create a long-running time-series. Author Keywords: Magnetograms
Social Anxiety and Emotional Competence
Prior research has examined social anxiety, emotional competence (EC) and life adjustment (i.e., loneliness and life satisfaction) using cross-sectional designs, although there is limited information on their association over time. The present study examined the impact of social anxiety on life adjustment and assessed if EC could mediate this relationship from young to middle adulthood. University students (N = 283) completed self-report measures at two time points: in first year university and 15 years later. The results accord with previous research demonstrating the stability and slight decrease of social anxiety over time. Social anxiety in young adulthood was a robust predictor of loneliness in middle adulthood, and a weak predictor of life dissatisfaction for men. Mediation analyses revealed that social anxiety was indirectly associated with interpersonal adjustment via EC, especially the intrapersonal EC domain. Social anxiety requires early intervention and EC may help to prevent later social anxiety and maladjustment. Author Keywords: emotional intelligence, life adjustment, social anxiety
It's All in Your Head
The Continuity Hypothesis states that dreams reflect waking day cognition and experiences, which reflect one’s mental health status. As such, dreams are, by extension, cognitions that occur during sleep. To date, Cognitive Behavioural Therapy (CBT) is deemed the most efficacious method of social anxiety treatment by working with cognitions. The current study utilized both CBT and The Storytelling Method (TSM) of dream interpretation, whose methodology is based on CBT; CBT works with waking cognitions and TSM works with sleep cognition. This study examined the effectiveness in decreasing social anxiety symptoms with TSM and comparing its efficacy to a traditional CBT technique. Undergraduate psychology students (N = 36) completed a daily journal of either the TSM or CBT format for two weeks. Participants completed self-report measures of social anxiety, state-anxiety, and depression before and after practicing either method. TSM did not significantly decrease levels of social anxiety, state-anxiety, or depression, whereas CBT significantly decreased only social anxiety levels. Dream content reflecting waking day anxiety and depression did not decrease over time, coinciding with the findings that students did not experience a decrease in their waking day life, supporting the Continuity Hypothesis. Findings suggest anxiety and depression to be very stable in this sample. Future research should explore interventions that are clinician-guided, in a group setting, or, occur over a longer period of time. Author Keywords: Content Analysis, Social anxiety, The Storytelling Method
Augmented Reality Sandbox (Aeolian Box)
The AeolianBox is an educational and presentation tool extended in this thesis to represent the atmospheric boundary layer (ABL) flow over a deformable surface in the sandbox. It is a hybrid hardware cum mathematical model which helps users to visually, interactively and spatially fathom the natural laws governing ABL airflow. The AeolianBox uses a Kinect V1 camera and a short focal length projector to capture the Digital Elevation Model (DEM) of the topography within the sandbox. The captured DEM is used to generate a Computational Fluid Dynamics (CFD) model and project the ABL flow back onto the surface topography within the sandbox. AeolianBox is designed to be used in a classroom setting. This requires a low time cost for the ABL flow simulation to keep the students engaged in the classroom. Thus, the process of DEM capture and CFD modelling were investigated to lower the time cost while maintaining key features of the ABL flow structure. A mesh-time sensitivity analysis was also conducted to investigate the tradeoff between the number of cells inside the mesh and time cost for both meshing process and CFD modelling. This allows the user to make an informed decision regarding the level of detail desired in the ABL flow structure by changing the number of cells in the mesh. There are infinite possible surface topographies which can be created by molding sand inside the sandbox. Therefore, in addition to keeping the time cost low while maintaining key features of the ABL flow structure, the meshing process and CFD modelling are required to be robust to variety of different surface topographies. To achieve these research objectives, in this thesis, parametrization is done for meshing process and CFD modelling. The accuracy of the CFD model for ABL flow used in the AeolianBox was qualitatively validated with airflow profiles captured in the Trent Environmental Wind Tunnel (TEWT) at Trent University using the Laser Doppler Anemometer (LDA). Three simple geometries namely a hemisphere, cube and a ridge were selected since they are well studied in academia. The CFD model was scaled to the dimensions of the grid where the airflow was captured in TEWT. The boundary conditions were also kept the same as the model used in the AeolianBox. The ABL flow is simulated by using software like OpenFoam and Paraview to build and visualize a CFD model. The AeolianBox is interactive and capable of detecting hands using the Kinect camera which allows a user to interact and change the topography of the sandbox in real time. The AeolianBox’s software built for this thesis uses only opensource tools and is accessible to anyone with an existing hardware model of its predecessors. Author Keywords: Augmented Reality, Computational Fluid Dynamics, Kinect Projector Calibration, OpenFoam, Paraview
Study of Aerosols for use in Water Remediation of Pharmaceutical Pollutants
In this thesis, aerosolization was studied as a possible means of water remediation for several environmentally relevant pharmaceutical pollutants, known for their persistence in wastewater effluent and potable water sources. Seven different pharmaceutical compounds and a well-known plasticizer were all shown to decrease considerably in concentration in aerosol that was produced and subsequently collected within a short time span. Strong evidence is presented that an enhanced rate of partitioning into the gas phase at the air-water interface of water droplets exists for every compound tested relative to that occurring in bulk solution. UV photolysis in aerosols was also explored and shown for sulfamethoxazole to be at least an order of magnitude faster in aerosols then in bulk solution. The implications towards both the environmental fate, and removal of these compounds from water sources is discussed. Author Keywords: Aerosols, Air-water partitioning, Pharmaceuticals, Photolysis, Sulfamethoxazole
Anthropogenic microfibres in background natural environments in Ireland
Microfibres, which are threadlike particles < 5 mm, are the most common type of microplastic reported in the environment. However, few studies have focused on their abundance in background natural environments. This study assessed the abundance of microfibres in rainfall samples (from four precipitation monitoring stations) and across three headwater lake catchments that were in remote, undeveloped areas, away from anthropogenic disturbance and anthropogenic emission sources (i.e., sites were background natural environments). Anthropogenic microfibres were observed in all samples using visual identification methods, with Raman spectroscopy confirming the presence of polyester film and synthetic pigments, e.g., indigo and hostasol green. The estimated annual average atmospheric deposition of microfibres was ~28,800 mf m-2. Meteorological variables, e.g., rain, wind direction, and relative humidity were correlated with the abundance of microfibres. The average abundance of microfibres in headwater lake catchments was 24 mf g-1 in moss, 0.70 mf m-3 in surface trawl, 9,690 mf m-3 in subsurface, 910 mf kg-1 in lake sediment and 576 mf kg-1 in lakeshore sediment. Author Keywords: Atmospheric Deposition, Background Environments, Headwater Lake Catchments, Microfibres, Microplastics, Rainfall
An Emergent Model of the Return to Learn Process for Adolescents with Prolonged Concussion
Current literature on concussion management focuses primarily on the return to physical activity, while the return to learn process is less clearly understood. This knowledge gap is particularly problematic for adolescents, whose primary responsibility is academics. The present study sought to develop a more in-depth understanding of the return to learn process through the perspectives of adolescents who had sustained a concussion and their parents in in-person, semi-structured interviews. A substantive grounded theory of the return to learn process for adolescents that emerged from the data is provided. The basic model is consistent with many speculative, non-empirically based concussion management protocols, but extends these models by emphasizing the central role of parents in managing their child’s recovery process, highlighting the importance of role fulfillment within the concussion management network, and identifying the impact of the adolescent’s capacity and readiness for help-seeking. The results also highlight the vulnerability of concussed adolescents to losing their support structure as they move through key school transitions. Implications for educators, medical professionals, parents, and adolescents in the return to learn process are also discussed. Author Keywords: Adolescent, Concussion, Concussion Management, Multidisciplinary Management, Return to Learn, Return to School
Cytokinins in nematodes
To investigate cytokinins (CKs) in nematodes, CK profiles of a free-living Caenorhabditis elegans and a plant parasitic Heterodera glycines (soybean cyst nematode, SCN) were determined at the egg and larval stages. SCN had higher total CK level than C. elegans; however, CKs in SCN were mostly inactive precursors, whereas C. elegans had more bioactive forms. This is the first study to show that methylthiols are present in nematodes and may affect plant infection. In infectious SCN larvae, methylthiol levels were much higher than in eggs or C. elegans larvae. Furthermore, The CK profiles of SCN-susceptible and resistant Glycine max cultivars at three developmental stages revealed that, regardless of the resistance level, SCN infection caused an increase in root CKs. One resistant cultivar, Pion 93Y05, showed significantly high levels of bioactive N6-isopentenyladenine (iP) in the non-infected roots which indicated a potential role of CKs in soybean resistance to SCN. Author Keywords: Cytokinins, HPLC-MS/MS, Nematode, SCN resistance, Soybean
Academic Procrastination, Self-Regulation, Anxiety and Personality (ASAP)
Academic procrastination is analogous to a common cold: pervasive and with no established cure. Students experience repercussions that are not inclusive to academic performance, but rather, are experienced across mental, physical, social and emotional domains as well. While this necessitates treatment, much of the behaviour has yet to be explained. In the current study, a state approach was integrated to explore procrastination in terms of the Yerkes-Dodson paradigm. Procrastination was hypothesized to arise for one of two reasons: students are either too low or too high in anxiety. A sample of 847 Ontario undergraduate students completed measures of procrastination, state-anxiety, personality, and self-regulation. Results suggest 88% of students procrastinate regularly, and contrary to what was hypothesized, procrastination and anxiety were linearly related. Independent t-tests establish that relative to non-procrastinators, procrastinators are significantly more emotionally and biologically dysregulated and less socially integrated. Factor analysis demonstrated three central reasons contributing to procrastination, which were used as the basis to establish types of procrastination: social (n=61), self-doubt (n=70) and low-energy (n=76) procrastinators. Results indicate divergences across procrastination type with respect to personality as well as biological, affective and social domains. Findings also inform that the expression of procrastination, varies across student. Overall, findings suggest that academic interventions should acknowledge and address the variability among procrastinators. Author Keywords: ACADEMIC PROCRASTINATION, ANXIETY, PERSONALITY, SELF-REGULATION
Advanced broadband CARS microscopy based on a supercontinuum-generating photonic crystal fiber
I have developed and improved a coherent anti-Stokes Raman scattering (CARS) microscope based on the spectral focusing (SF) technique. The CARS microscope uses an 800 nm oscillator and a photonic crystal fibre module to generate the supercontinuum Stokes. The photonic crystal fibre was originally designed to generate light beyond 945 nm which is useful for CARS microscopy in the CH/OH frequencies but essentially prevents access to the important fingerprint region at lower frequencies. With expert and nontraditional approaches to generating supercontinuum with sufficient power at wavelengths below 945 nm, I substantially extend the usefulness of the module for SF-CARS microscopy deep into the fingerprint region. Moreover, with the invention of a dynamic supercontinuum generation scheme we call "spectral surfing," I improve both the brightness of the CARS signal and extend the accessible CARS frequency range to frequencies as low as 350 cm$^{-1}$ and as high as 3500 cm$^{-1}$---all in a single scan-window. I demonstrate the capabilities of our broadband SF-CARS system through CARS and four-wave mixing hyperspectroscopy on samples such as astaxanthin, lily pollen and glass; liquid chemicals such as benzonitrile, nitrobenzene and dimethyl sulfoxide; and on pharmaceutical samples such as acetaminophen, ibuprofen, and cetirizine. Furthermore, In search of more useful Stokes supercontinuum sources, I compare the performance of two commercial photonic crystal fibre modules for use in SF-CARS applications, ultimately finding that one module provides better spectral characteristics for static supercontinuum use, while the other provides improved characteristics when spectral surfing is implemented. Author Keywords: coherent anti-Stokes Raman scattering, nonlinear microscopy, scanning microscopy, spectroscopy, supercontinuum generation, vibrational spectroscopy
At the Intersection Between History and Fiction in Biography and Autobiography; A Repositioning, Using the Quest for the Historical Jesus as a Case Study
The modern sense of historicism developed over time that brought different textures at the intersection between history and fiction. The life of Jesus of Nazareth, prolifically researched after Herman Reimarus (1694-1768) right until today – a phenomenon known as The Quest for the Historical Jesus – provides an instructive case study for a wider discussion about the intersection between history and fiction in biography and autobiography. As a result of these centuries of Jesuanic research, one can identify a set predictable challenges which life-writing may need to confront. Furthermore, interesting historiographical criteria to detect factual authenticity versus factual inauthenticity for life-writing were also developed. Nevertheless, the depth of disagreement about a well-researched narrative such as the Jesuanic chronicle can eventually feel almost insurmountable. Pessimism, in fact, has become widespread. Thus, this dissertation raises the question: Is it but a vain attempt to search for truth by attempting to draw a sharp line between fiction and history? Hence, the discussion moves to Mikhail Bakhtin whose insistence on dialogism rather than truth seeking provides a more relational approach to appreciating the intersection between history and fiction in biography and autobiography. Author Keywords: biography, Copernicanism, dialogism, fiction, historicism, monologism
Ligand Binding Properties of Giardia Flavohemoglobin
The parasitic protist Giardia intestinalis possesses flavohemoglobin (gFlHb), an enzyme that detoxifies nitric oxide to the less harmful nitrate, and is a potential target for antigiardial drugs that act as ligands to the iron of its heme cofactor. In this work, the binding constants KD of gFlHb, three active-site variants (Q54L, L58A, Y30F) and the E. coli flavohemoglobin (Hmp) towards cyanide, azide and several substituted imidazoles were measured by optical titration. Certain cases such as gFlHb and Hmp were studied further by isothermal titration calorimetry. Binding constants for cyanide and the imidazoles ranged from 2 to 100 M, with the highest affinities observed with for miconazole, a bulky substituted imidazole. Azide was a poor ligand, with binding constants between 0.48 and 26 mM. Among gFlHb and its mutants, L58A tended to have the highest ligand affinities, as mutation of the distal leucine to a less bulky distal alanine residue facilitates the access of the exogenous ligand to the heme iron. In contrast, the Q54L and Y30F variants had binding affinities that in most cases were similar to wild type, which suggests that the inability of their side chains to form hydrogen bonds to these ligands is not a significant factor in binding of imidazole ligands to the enzyme. Comparative results for Hmp and gFlHb ligand binding affinities revealed slight differences which might be explained by the presence of different residues in their active sites apart from their conserved residues. Author Keywords: Flavohemoglobin, Giardia intestinalis, Imidazole binding, Ligand binding, Nitrosative stress

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