Graduate Theses & Dissertations

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An Investigation of the Impact of Big Data on Bioinformatics Software
As the generation of genetic data accelerates, Big Data has an increasing impact on the way bioinformatics software is used. The experiments become larger and more complex than originally envisioned by software designers. One way to deal with this problem is to use parallel computing. Using the program Structure as a case study, we investigate ways in which to counteract the challenges created by the growing datasets. We propose an OpenMP and an OpenMP-MPI hybrid parallelization of the MCMC steps, and analyse the performance in various scenarios. The results indicate that the parallelizations produce significant speedups over the serial version in all scenarios tested. This allows for using the available hardware more efficiently, by adapting the program to the parallel architecture. This is important because not only does it reduce the time required to perform existing analyses, but it also opens the door to new analyses, which were previously impractical. Author Keywords: Big Data, HPC, MCMC, parallelization, speedup, Structure
An Official Plan for Peterborough, Ontario
Using the Official Plan as the case study, this research examines the extent to which underrepresented groups are engaged in public consultation in the planning process for the City of Peterborough, Ontario, Canada. The Official Plan, along with the tools and secondary plans and policies which reinforce it, shape how people navigate and benefit from the built environment, such as access to public institutions and amenities, transit, parks, safe public space, quality housing, and more. This research frames the Official Plan as an opportunity for the city to demonstrate its new commitment to transparency and community engagement. Drawing on a range of experts and community members, and best engagement practices of other Canadian municipalities and nongovernmental organizations, a set of recommendations is proposed for the city’s community engagement framework. These recommendations emphasize an inclusive, democratic, and feminist approach to engagement and consultation which honours lived experience and local knowledge of diverse and underrepresented demographics and multi-sector stakeholders. Author Keywords: diversity, equity , inclusion, marginalized , public engagement, underrepresented
An assessment of the determinants of, or barriers to, successful municipal food waste management systems
Food waste (FW) disposal has negative implications for the social, economic, and environmental sustainability of communities. While some municipalities in Canada have made improvements to their FW management, others have not been successful. Considering the complexity of the issues integrated into municipal FW management (MFWM), a mixed methodological approach was used to understand the determinants of, or barriers to, successful MFWM systems. Methods included analysis of primary data from a household survey with a fixed response and open-ended questions, along with analysis of the secondary literature. A comparative analysis of the results was undertaken to determine similarities and differences between successful and less successful cases (Guelph and London, Ontario, respectively) and the broader empirical literature. The results suggest the success of MFWM is determined by the commitment of political decision-makers to implement FW policies backed by adequate regulations, high levels of perceived behavioural control over barriers to participating in MFWM programs, and the ability to finance user-friendly MFWM infrastructure. Recommendations are made to guide policies and programming on food waste management. Author Keywords: Components of Waste management System , Composting, Determinants of Success, Food Waste Reduction, Households Food Waste Behaviour, Municipal Food Waste Management System
Analysis and reactions of aqueous selenide and other reduced inorganic selenium compounds under anoxic conditions
Selenide is cited as a geochemically important selenium (Se) species, but it is unknown whether selenide is a stable aqueous ion in natural waters. The feasibility of using anoxic anion exchange chromatography (AEC) coupled to dynamic reaction cell-inductively coupled plasma-mass spectrometry to separate aqueous selenide was investigated with the goal of quantifying this anion to determine its importance in reducing waters. It was possible to qualitatively identify selenide using AEC, but much of the aqueous selenide oxidises to Se0 faster than the separation procedure could be completed. AEC analyses of solutions containing polyselenides produced peaks for unidentified Se compounds, which have been assigned tentative structures Se2O22-, Se2O32-, and Se2O62- based on close matches in retention time to stable S compounds. The results of this work show that aqueous selenide can be qualitatively observed in synthetic solutions using AEC, but it is unknown whether these conditions are relevant to natural waters. Author Keywords: anoxic speciation, polyselenides, selenide, selenium geochemistry, selenium speciation, selenoselenate
Analyzing agricultural decision making in the Late Roman Empire
In the Roman World, at least 80% and up to 95% of the population lived and worked in a rural environment, driving the agronomic economy of the empire. During the Late Roman Empire (AD 300-600), there were a number of widespread political, social, and economic changes faced by the people who made up the empire. Through all these changes, the empire maintained its tax collection and households maintained agricultural production. I will be examining settlement in the rural region of Isauria (Rough Cilicia) to understand the Late Roman agricultural production in a rural environment. This thesis focuses on the decision making that all economic levels of households would face when producing goods within this Late Roman Economy. Using an economic theory of the peasant economy, I develop a framework through which to view the agronomic production of the Late Roman Period which I use to understand the household as an agent. Author Keywords: Ancient Economy, Isauria, Late Roman, Peasant Economy, Roman Economy
Analyzing the Effectiveness of Social Movements Opposing Fossil Fuel Infrastructure
Blocking fossil fuel infrastructure projects like pipelines is increasingly being seen as a legitimate way for civil society groups to reduce global carbon emissions. This research project is an exploratory case study of the Trans Mountain pipeline in British Columbia and its opposition. My research question asks, ‘What has each tactic/strategy of opposition in the campaign to stop the Trans Mountain pipeline expansion accomplished, and how have they been effective? How can they be done more effectively?’ Through interviews and an autoethnography, my research explores the effectiveness of activists in this campaign. I analyze the results of my findings within social movement theory and other activist definitions of effectiveness from my literature review. The more significant findings from my research are that activists need to do a better job educating the public on the issue, need to direct more of their resources towards promoting a solution to the issue and make alliances with other movements and groups. This research project contributes to the literature on the effectiveness of oppositional strategies and tactics of pipeline resistance, as well as social movement theory. Author Keywords: British Columbia, pipeline, protest, strategy, tactic, Trans Mountain
Anarchist Periodical Press in the United States
This dissertation focuses on the English-language anarchist periodical press in the United States in the 1890s and early 1900s. Each of the three chapters of this dissertation examines one anarchist paper and its coverage of a specific issue. The first chapter focuses on Prison Blossoms, which was started by Alexander Berkman, Carl Nold, and Henry Bauer and written and circulated in the Western Penitentiary of Pennsylvania, and its engagement with Alexander Berkman's attempt to assassinate Henry Clay Frick. The second chapter examines Free Society, a weekly edited primarily by Abraham Isaak, and its contributors' writings on the assassination of President William McKinley by self-described anarchist Leon Czolgosz. Finally, the third chapter focuses on The Demonstrator, specifically its first volume which was edited by James F. Morton Jr. from the intentional community of Home, Washington, and the paper's work in supporting John Turner, the first anarchist targeted for deportation under the Immigration Act of 1903. Drawing upon critical discourse analysis, this dissertation incorporates examination of the context in which these papers were written (particularly the immediate concerns to which the papers' authors responded), the form and generic conventions of the anarchist press, including the approaches of the papers' respective editors, and the arguments advanced by their authors. It pays particular attention to the intertextuality of the anarchist press -- the ways in which those writing in anarchist papers addressed one another both within and across periodicals, generating anarchist thought through conversation and debate and enacting their anarchist ideals in the practice of publishing. This dissertation demonstrates that the anarchist periodical press, an element of anarchist history that has received little attention, offers important insights: it details how anarchists immediately responded to important issues of their time, and reveals the ways in which the emergence of anarchism was itself a collective effort, emerging from conversation, debate, and disagreement about how best to create radical change and what that change should look like. Author Keywords: anarchism, anarchist periodicals, critical discourse analysis, Free Society, Prison Blossoms, The Demonstrator
Anishinaabe Motherhood
The purpose of this qualitative study is to investigate Anishinaabe women’s Traditional Teachings and pedagogies in a contemporary context. Through this exploration, I have uncovered the tensions, challenges, and strengths that Anishinaabe gaashiyag (mothers) face when engaging with these Traditional Teachings and pedagogies. The research methodology I have used is a branch of grounded theory called the Anishinaabe Research Methodology, and it is integral to the Anishinaabe principles of living called the Seven Grandparent Teachings: Wisdom, Love, Respect, Bravery, Honesty, Humility, and Truth. I used a research method called the Nbwaachiwi (the art of visiting) method. I used the ‘Aunties kitchen table’ style of knowledge collection, where it is open-ended and one-on-one - like you would be at your auntie's kitchen table, sharing stories and having tea. By utilizing these principles, I conducted my research through the Anishinaabe-aadiziwin (culture and language – way of life) paradigm. I addressed multilayered Anishinaabe teachings and many connections to the land and spirituality. I have found that Anishinaabe gaashiyag feel pressure to adopt Western modes of raising their children. However, some young women are returning to the traditional Anishinaabe teachings by using traditional birthing techniques, tiknigaans (traditional baby carriers), and evolving our cultural practices to fit modern ways of living. The knowledge I present within this paper can inform mothers who want to learn Traditional Teachings and pedagogies, and thereby resist ongoing intergeneration trauma and colonization. New generations are identifying what the negative effects on raising Anishinaabe children and taking a stand to break ongoing trauma and abuse so that their children do not have to be subjected to it. These mothers are informed about cultural and Traditional Teachings with the hope that they can use this knowledge to assist them on their path to, and during, motherhood. Given the determination of these young mothers to raise their babies using Anishinaabe traditional methods, the future identities and lives of their children may be significantly better in a cultural sense than their predecessors. They will be the products of their mothers’ commitment to the resurgence of Anishinaabe maternal teachings and pedagogies. Author Keywords: Anishinaabe, Indigenous Motherhood, Motherhood, Parenting, Pedagogies, Teachings
Anishinaabemowin Teacher Perspectives of Indigenous Language Instruction in Nogojiwanong Public Schools
This thesis explores the importance of Indigenous languages and their revitalization, as well as the roles and responsibilities of schools through the perspective of Anishinaabemowin public school teachers in the Nogojiwanong, Peterborough ON, area. Three teachers were interviewed and have shared valuable insight into how they became teachers, how the language is taught in their schools, and the challenges associated with teaching these classes in these settings, as well as who should be learning and how these languages will bring us forward. From this information, recommendations for schools, school boards, and policy makers are included to better support instructors and students. Author Keywords: Anishinaabemowin, Indigenous, Indigenous Languages, Language Revitalization, Public Schools, Schools
Anthropogenic microfibres in background natural environments in Ireland
Microfibres, which are threadlike particles < 5 mm, are the most common type of microplastic reported in the environment. However, few studies have focused on their abundance in background natural environments. This study assessed the abundance of microfibres in rainfall samples (from four precipitation monitoring stations) and across three headwater lake catchments that were in remote, undeveloped areas, away from anthropogenic disturbance and anthropogenic emission sources (i.e., sites were background natural environments). Anthropogenic microfibres were observed in all samples using visual identification methods, with Raman spectroscopy confirming the presence of polyester film and synthetic pigments, e.g., indigo and hostasol green. The estimated annual average atmospheric deposition of microfibres was ~28,800 mf m-2. Meteorological variables, e.g., rain, wind direction, and relative humidity were correlated with the abundance of microfibres. The average abundance of microfibres in headwater lake catchments was 24 mf g-1 in moss, 0.70 mf m-3 in surface trawl, 9,690 mf m-3 in subsurface, 910 mf kg-1 in lake sediment and 576 mf kg-1 in lakeshore sediment. Author Keywords: Atmospheric Deposition, Background Environments, Headwater Lake Catchments, Microfibres, Microplastics, Rainfall
Anthropogenic particles and microplastics in headwater lake catchments in Muskoka-Haliburton, Canada
Microplastics, plastic particles less than 5 mm in diameter, are ubiquitous in the environment. This study estimated the abundance of microplastics (MP) in atmospheric deposition from four background monitoring stations in Muskoka-Haliburton, south-central Ontario, Canada and quantified the fate of microplastics to three background headwater lake catchments in Muskoka-Haliburton. Microplastics were observed across all sample media with polyethylene terephthalate and polyamide being predominant. The average atmospheric deposition of anthropogenic particles was 57 particles/m2/day with a plastic deposition rate of 7 MP/m2/day. Atmospheric deposition represented the highest daily microplastic flux rate to the three headwater lake catchments compared, 1.5 to 4 times greater than the flux rate for the inflow streams suggesting that atmospheric deposition can account for all the inflowing microplastics. A large fraction of the microplastics from atmospheric deposition (41 – 73%) were retained in the terrestrial catchment and there was a high retention of microplastics in each of the study lakes (1.44 – 7.39 million MP/day; 30 – 45%) suggesting that a large fraction of the terrestrial catchment export is retained by the lakes and that lakes are a reservoir for microplastics. Author Keywords: Atmospheric deposition, Microplastics, Ontario, Plastic pollution, Sinks, Sources
Anti-Social Cognition
Callousness, deceit, and manipulativeness have been identified as common characteristics of the Dark Triad. Researchers have argued that empathy and Theory of Mind underlie these characteristics. This study aimed to (a) examine the relationships between the Dark Triad, empathy, and Theory of Mind, (b) determine if empathy and Theory of Mind explain the overlap between the Dark Triad personalities, and (c) test if Theory of Mind mediated the relationship between cognitive empathy and the Dark Triad. A sample of 267 undergraduate students completed self-report scales and a film-based assessment to measure the variables of interest. The results indicated that the Dark Triad personalities were negatively associated with affective empathy but were not uniformly associated with cognitive empathy and Theory of Mind. Affective empathy did not explain the overlap between the Dark Triad personalities. Finally, Theory of Mind did not mediate the relationship between cognitive empathy and the Dark Triad. Author Keywords: Dark Triad, Empathy, Mediation, Theory of Mind

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Format: 2024/04/16