Graduate Theses & Dissertations


"Multimodal Contrast" from the Multivariate Analysis of Hyperspectral CARS Images
The typical contrast mechanism employed in multimodal CARS microscopy involves the use of other nonlinear imaging modalities such as two-photon excitation fluorescence (TPEF) microscopy and second harmonic generation (SHG) microscopy to produce a molecule-specific pseudocolor image. In this work, I explore the use of unsupervised multivariate statistical analysis tools such as Principal Component Analysis (PCA) and Vertex Component Analysis (VCA) to provide better contrast using the hyperspectral CARS data alone. Using simulated CARS images, I investigate the effects of the quadratic dependence of CARS signal on concentration on the pixel clustering and classification and I find that a normalization step is necessary to improve pixel color assignment. Using an atherosclerotic rabbit aorta test image, I show that the VCA algorithm provides pseudocolor contrast that is comparable to multimodal imaging, thus showing that much of the information gleaned from a multimodal approach can be sufficiently extracted from the CARS hyperspectral stack itself. Author Keywords: Coherent Anti-Stokes Raman Scattering Microscopy, Hyperspectral Imaging, Multimodal Imaging, Multivariate Analysis, Principal Component Analysis, Vertex Component Analysis
This thesis focuses on the design of a modelling framework consisting of loose-coupling of a sequence of spatial and process models and procedures necessary to predict future flood events for the years 2030 and 2050 in Tabasco Mexico. Temperature and precipitation data from the Hadley Centers Coupled Model (HadCM3), for those future years were downscaled using the Statistical Downscaling Model (SDSM4.2.9). These data were then used along with a variety of digital spatial data and models (current land use, soil characteristics, surface elevation and rivers) to parameterize the Soil Water Assessment Tool (SWAT) model and predict flows. Flow data were then input into the Hydrological Engineering Centers-River Analysis System (HEC-RAS) model. This model mapped the areas that are expected to be flooded based on the predicted flow values. Results from this modelling sequence generate images of flood extents, which are then ported to an online tool (ADAPT) for display. The results of this thesis indicate that with current prediction of climate change the city of Villahermosa, Tabasco, Mexico, and the surrounding area will experience a substantial amount of flooding. Therefore there is a need for adaptation planning to begin immediately. Author Keywords: Adaptation Planning, Climate Change, Extreme Weather Events, Flood Planning, Simulation Modelling
ADHD Symptomatology Across Adulthood
Objective: To improve on several methodological issues and research gaps regarding current literature investigating the stability of ADHD symptomatology across adulthood and relationships between the two core ADHD symptom dimensions (i.e., inattention and hyperactivity-impulsivity) and multiple life outcomes in adults. Method: A large sample of postsecondary students were initially assessed for ADHD symptomatology using the Conners’ Adult ADHD Rating Scale (CAARS). Six years later, academic success was assessed using students’ official academic records (e.g., final GPAs and degree completion status), and fifteen years later, participants were re-assessed using the CAARS and several measures of life success (e.g., relationship satisfaction, career satisfaction, and stress levels). Results: Inattention and hyperactivity-impulsivity symptoms showed strong stability across the 15-year period. Additionally, greater inattention symptoms during emerging adulthood and early middle adulthood were consistently associated with poorer life success (e.g., lower GPAs, poorer relationship and career satisfaction), particularly for men. Associations for hyperactivity-impulsivity symptoms were less consistent. Conclusion: ADHD symptomatology can be conceptualized as a stable, dimensional trait across adulthood, with robust associations with measures of life success. Author Keywords: academic success, ADHD, adults, job satisfaction, relationship satisfaction, stability
Absorbance and Fluorescence Characteristics of Dissolved Organic Matter in North Atlantic, Pacific and Arctic Oceans
This thesis was designed to quantify absorbance and fluorescence characteristics of dissolved organic matter (DOM) in North Atlantic, Pacific and Arctic Oceans. DOM was described in water masses of distinct sources and formation pathways as well as in regions where environmental forcings such as deep water upwelling, enhanced biological activity and receipt of freshwater discharge were prevalent. Influence of sea ice on DOM in Beaufort Sea mixed layer (0 to 30 m) seawater was investigated based on sea ice extent as well as freshwater fractions of meteoric (fmw) and sea ice melt water (fsim) calculated from oxygen isotope ratio (δ18O). The effect of DOM exposure to simulated solar radiation was also assessed to determine the resilience of fluorescent fractions of DOM to photodegradation. This research aims to further our ability to trace DOM in marine environments and better understand its transformation pathways and predict its fate as part of the oceanic carbon cycle in a changing climate. Author Keywords: Absorbance, Arctic Ocean, Dissolved organic matter, Fluorescence, Parallel Factor Analysis, Sea Ice
Abundance and Distribution of Microplastics in Lake Scugog Catchment, Ontario
Plastic pollution is a growing concern, owing to its durability, ubiquity, and potential health impacts. The overall objective of this study was to assess the abundance and distribution of microplastics within Lake Scugog catchment, Ontario. This was fulfilled through two tasks (i) the development of a microplastic particle budget for the lake catchment, and (ii) the determination of the dry deposition of atmospheric microplastics in Port Perry, Ontario. The total input of microplastics into Lake Scugog (atmospheric deposition and stream inflow) was 2491 x106 mp/day, while the output (lake outflow and sedimentation) was 1761 x106 mp/day, suggesting that 29% of inputs were retained in the lake. The dry deposition of microplastics in Port Perry was 1257 mp/m2/day, which was high when compared to bulk deposition (37 mp/m2/day) in the same area. By quantifying the major pathways of microplastics better management techniques can be implemented. Author Keywords: Catchment, Dry Deposition, Microplastics, Ontario, Particle Budget, Plastic pollution
Academic Efficiency
Universities produce a significant and increasing share of basic research that is later commercialized by firms. We argue that the university's prominence as a producer of basic research is the result of a differential efficiency in research production that cannot be replicated by firms or individual agents - teaching. By using research accomplishments to signal knowledge and attract tuition-paying students, universities are uniquely positioned to undertake certain types of research projects. However, in a market for innovation without patent rights, a significant and increasing number of basic research projects, that are social welfare improving, cannot be initiated by firms or universities. The extension of patent rights to university-generated research elegantly redresses this issue and leaves us to ponder important questions about the future of our innovation-driven economies. Author Keywords: Innovation, Intellectual Property Rights, Research, Science Technology and Innovation Policy
Academic Procrastination, Self-Regulation, Anxiety and Personality (ASAP)
Academic procrastination is analogous to a common cold: pervasive and with no established cure. Students experience repercussions that are not inclusive to academic performance, but rather, are experienced across mental, physical, social and emotional domains as well. While this necessitates treatment, much of the behaviour has yet to be explained. In the current study, a state approach was integrated to explore procrastination in terms of the Yerkes-Dodson paradigm. Procrastination was hypothesized to arise for one of two reasons: students are either too low or too high in anxiety. A sample of 847 Ontario undergraduate students completed measures of procrastination, state-anxiety, personality, and self-regulation. Results suggest 88% of students procrastinate regularly, and contrary to what was hypothesized, procrastination and anxiety were linearly related. Independent t-tests establish that relative to non-procrastinators, procrastinators are significantly more emotionally and biologically dysregulated and less socially integrated. Factor analysis demonstrated three central reasons contributing to procrastination, which were used as the basis to establish types of procrastination: social (n=61), self-doubt (n=70) and low-energy (n=76) procrastinators. Results indicate divergences across procrastination type with respect to personality as well as biological, affective and social domains. Findings also inform that the expression of procrastination, varies across student. Overall, findings suggest that academic interventions should acknowledge and address the variability among procrastinators. Author Keywords: ACADEMIC PROCRASTINATION, ANXIETY, PERSONALITY, SELF-REGULATION
Acidification of lakes in northern Saskatchewan
The emission of acid precursors by large point sources in Western Canada (such as the Athabasca Oil Sands Region) has prompted studies into the possible impact to downwind aquatic and terrestrial ecosystems. Sensitivity of catchments to acidic deposition was estimated for the total lake population of northern Saskatchewan (n=89,947) using regression kriging. Under the Steady State Water Chemistry model, a range of 12-15% of the total catchment population was predicted to be in exceedance of critical loads under 2006 deposition levels and 6% of catchments were estimated to be very sensitive (pH below 6 and acid neutralizing capacity, alkalinity, calcium below 50 eqL-1). Temporal changes in soil and water chemistry estimated for 18 Alberta and Saskatchewan catchments using the Very Simple Dynamic and PROFILE models showed that changes in soil base saturation and lake acid neutralizing capacity between 1850 and 2100 were slight, declining 0.8% and 0.9% by 2012, respectively. Author Keywords: acidification, critical loads, exceedance, PROFILE, regression kriging, VSD
Active layer thermal regime in subarctic wetlands at the southern edge of continuous permafrost in Canada
The fine-scale controls of active layer dynamics in the subarctic at the southern edge of continuous permafrost are currently poorly understood. The goal of this thesis was to understand how environmental conditions associated with upland tundra heath, open graminoid fen, and palsas/peat plateaus affected active layer thermal regime in a subarctic peatland in northern Canada. Indices of active layer thermal regime were derived from in-situ measurements of ground temperature and related to local measurements of air temperature, snow depth, and surface soil moisture. Active layer thaw patterns differed among landforms, with palsas and tundra heath having the least and greatest amount of thaw, respectively. Tundra heath thaw patterns were influenced by the presence of gravel and sandy soils, which had higher thermal conductivity than the mineral and organic soils of fens and palsas. Vegetation also influenced thaw patterns; the lichen cover of palsas better protected the landform from incoming solar radiation than the moss, lichen, and low-lying shrub cover of upland tundra heath, thus allowing for cooler ground temperatures. Air temperature was the most significant predictor of active layer thermal regime. Surface soil moisture varied among landforms and greater surface soil moisture reduced the amount of active layer thaw. These findings improved understanding of how landform and climate can interact to affect the active layer. Author Keywords: Active layer thermal regime, Active layer thickness, Climate change, Peatland, Permafrost, Subarctic
Adaptive Genetic Markers Reveal the Biological Significance and Evolutionary History of Woodland Caribou (Rangifer tarandus caribou) Ecotypes
Migratory and sedentary ecotypes are phenotypic distinctions of woodland caribou. I explored whether I could distinguish between these ecotypes in Manitoba and Ontario using genetic signatures of adaptive differentiation. I anticipated that signatures of selection would indicate genetic structure and permit ecotype assignment of individuals. Cytochrome-b, a functional portion of the mitochondrial genome, was tested for evidence of adaptation using Tajima’s D and by comparing variations in protein physiology. Woodland caribou ecotypes were compared for evidence of contemporary adaptive differentiation in relation to mitochondrial lineages. Trinucleotide repeats were also tested for differential selection between ecotypes and used to assign individuals to genetic clusters. Evidence of adaptive variation in the mitochondrial genome suggests woodland caribou ecotypes of Manitoba and Ontario corresponded with an abundance of functional variation. Woodland caribou ecotypes coincide with genetic clusters, and there is evidence of adaptive differentiation between migratory caribou and certain sedentary populations. Previous studies have not described adaptive variation in caribou using the methods applied in this study. Adaptive differences between caribou ecotypes suggest selection may contribute to the persistence of ecotypes and provides new genetic tools for population assessment. Author Keywords: Adaptation, Cytochrome-B, Ecotype, RANGIFER TARANDUS CARIBOU, Selection, TRINUCLEOTIDE REPEAT
Adoption of a Finite Element Model of Material Deformation Relevant to Studying Corneal Biomechanics
The human cornea is required to exhibit specific material properties to maintain its regular shape under typical intraocular pressures which then allow for its correct optical functionality. In this thesis, the basis of continuum solid mechanics and the finite element method are introduced. We use finite element modelling to simulate the extension of an effective-1d, linear-elastic bar, a cornea-like body governed by Poisson’s equation, and the deformation of a loaded, linear-elastic, cube. Preliminary results for the deformation of a simulated, linear-elastic, cornea have also been achieved using the finite element approach. Author Keywords: continuum solid mechanics, corneal biomechanics, finite element method, intraocular pressure
Aeolian Impact Ripples in Sand Beds of Varied Texture
A wind tunnel study was conducted to investigate aeolian impact ripples in sand beds of varied texture from coarsely skewed to bimodal. Experimental data is lacking for aeolian megaripples, particularly in considering the influence of wind speed on ripple morphometrics. Additionally, the modelling community requires experimental data for model validation and calibration. Eighteen combinations of wind speed and proportion of coarse mode particles by mass were analysed for both morphometrics and optical indices of spatial segregation. Wind tunnel conditions emulated those found at aeolian megaripple field sites, specifically a unimodal wind regime and particle transport mode segregation. Remote sensing style image classification was applied to investigate the spatial segregation of the two differently coloured size populations. Ripple morphometrics show strong dependency on wind speed. Conversely, morphometric indices are inversely correlated to the proportion of the distribution that was comprised of coarse mode particles. Spatial segregation is highly correlated to wind speed in a positive manner and negatively correlated to the proportion of the distribution that was comprised of coarse mode particles. Results reveal that the degree of spatial segregation within an impact ripple bedform can be higher than previously reported in the literature. Author Keywords: Aeolian, Impact Ripples, Megaripple, Self-organization, Wind Tunnel


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