Graduate Theses & Dissertations

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Hybridization dynamics in cattails (Typha spp.,) in northeastern North America
Interspecific hybridization is an important evolutionary process which can contribute to the invasiveness of species complexes. In this dissertation I used the hybridizing species complex of cattails (Typha spp., Typhaceae) to explore some of the processes that could contribute to hybridization rates. Cattails in northeastern North America comprise the native T. latifolia, the non-native T. angustifolia, and their fertile hybrid, T. × glauca. First, I examined whether these taxa segregate by water depth as habitat segregation may be associated with lower incidence of hybridization. I found that these taxa occupy similar water depths and therefore that habitat segregation by water depth does not promote mating isolation among these taxa. I then compared pollen dispersal patterns between progenitor species as pollen dispersal can also influence rates of hybrid formation. Each progenitor exhibits localized pollen dispersal, and the maternal parent of first generation hybrids captures more conspecific than heterospecific pollen; both of which should lead to reduced hybrid formation. I then conducted controlled crosses using all three Typha taxa to quantify hybrid fertility and to parameterize a fertility model to predict how mating compatibilities should affect the composition of cattail stands. I found that highly asymmetric formation of hybrids and backcrosses and reduced hybrid fertility should favour the maintenance of T. latifolia under certain conditions. Finally, I used a population genetics approach to characterize genetic diversity and structure of Typha in northeastern North America to determine the extent to which broad-scale processes such as gene flow influence site-level processes. I concluded that hybrids are most often created within sites or introduced in small numbers rather than exhibiting broad-scale dispersal. This suggests that local processes are more important drivers of hybrid success than landscape-scale processes which would be expected to limit the spread of the hybrid. Though my findings indicate some barriers to hybridization in these Typha taxa, hybrid cattail dominates much of northeastern North America. My results therefore show that incomplete barriers to hybridization may not be sufficient to prevent the continued dominance of hybrids and that active management of invasive hybrids may be required to limit their spread. Author Keywords: fertility model, genetic structure, Hybridization, invasive species, niche segregation, pollen dispersal
Tests of the Invasional Meltdown Hypothesis in invasive herbaceous plant species in southern Ontario
According to the Invasional Meltdown Hypothesis (IMH), invasive species may interact in their introduced range and facilitate future invasions. This study investigated the possibility that Alliaria petiolata, an invasive allelopathic herbaceous plant in Ontario, is facilitating invasions by additional alien species. Two allelopathic focal species were chosen for this study: the native Solidago canadensis and the invasive A. petiolata. Field surveys in southern Ontario that quantified plant biodiversity in plots that included one or both focal species revealed no support for the IMH, although fewer species co-existed with A. petiolata than with S. canadensis. A year-long recruitment experiment in Peterborough, Ontario, also produced results inconsistent with the IMH, although did provide some evidence that A. petiolata limited recruitment of other species. These results collectively show negative impacts on regional biodiversity by A. petiolata, even in the absence of an invasional meltdown. Author Keywords: allelopathy, Alliaria petiolata, co-occurrence surveys, invasional meltdown hypothesis, invasive species, Solidago canadensis
Effects of Geographic Factors on the Wild Harvest of Large Mammals across North America
While the harvest of mammals is monitored in each jurisdiction across Canada and the USA, there has been no analysis of this wild harvest at a continental scale across North America. The recreational wild harvest of large mammals varies geographically across North America, and I hypothesized that this variation is influenced by both anthropogenic and other environmental factors on the landscape. I tested this hypothesis using annual harvest tallies collected by Conservation Visions Inc. for mammals for each state, provincial, and territorial jurisdiction in Canada and the USA. I built multiple additive models of the harvest, in one harvest year, 2015 – 2016, to test for landscape gradients that explain the variation in harvest levels for seven large mammal species: white-tailed deer (Odocoileus virginianus), black bear (Ursus americanus), bighorn sheep (Ovis canadensis), elk (Cervus canadensis), mule deer (Odocoileus hemionus), pronghorn (Antilocapra americana), and moose (Alces alces). I built these models from a suite of nine putative predictor variables that comprised landcover, human footprint, and evapotranspiration. For all large mammal species except for pronghorn, anthropogenic influence had a positive effect on the wild harvest density, consistent with the idea that the proximity of human populations and roads are important for fostering wild harvest activity by providing hunters access to hunting areas. The harvest of white-tailed deer, elk, and pronghorn were negatively affected by vegetation structure, urbanization, and primary productivity, respectively. Understanding the recreational wild harvest at a broad-spatial scale provides a unique perspective of the North American model of wildlife conservation and spurs future comparative analyses of the wild harvest across spatial scales. Author Keywords: Anthropogenic Influence, Hunting, Large Mammals, Primary Productivity, Vegetation Structure, Wild Harvest
Assessing Molecular and Ecological Differentiation in Wild Carnivores
Wild populations are notoriously difficult to study due to confounding stochastic variables. This thesis tackles two components of investigating wild populations. The first examines the use of niche modeling to quantify macro-scale predator-prey relationships in canid populations across eastern North America, while the second examines range-wide molecular structure in Canada lynx. The goal of the first chapter is to quantify niche characteristics in a Canis hybrid zone of C. lupus, C. lycaon, and C. latrans to better understand the ecological differentiation of these species, and to assess the impacts of incorporating biotic interactions into species distribution models. The goal of the second chapter is to determine if DNA methylation, an epigenetic marker that modifies the structure of DNA, can be used to differentiate populations, and might be a signature of local adaptation. Our results indicated that canids across the hybrid zone in eastern North America exhibit low levels of genetic and ecological differentiation, and that the importance of biotic interactions are largely lost at large spatial scales. We also identified cryptic structure in methylation patterns in Canada lynx populations, which suggest signatures of local adaptation, and indicate the utility of DNA methylation as a marker for investigating adaptive divergence. Author Keywords: Ecological Epigenetics, Ecological Genetics, SDM
Eco-evolutionary Dynamics in a Commercially Exploited Freshwater Fishery
Fisheries assessment and management approaches have historically focused on individual species over relatively short timeframes. These approaches are being improved upon by considering the potential effects of both broader ecological and evolutionary processes. However, only recently has the question been raised of how ecological and evolutionary processes might interact to further influence fisheries yield and sustainability. My dissertation addresses this gap in our knowledge by investigating the role of eco-evolutionary dynamics in a commercially important lake whitefish fishery in the Laurentian Great Lakes, a system that has undergone substantial ecosystem change. First, I link the timing of large-scale ecological change associated with a species invasion with shifts in key density-dependent relationships that likely reflect declines in the population carrying capacity using a model selection approach. Then, using an individual-based model developed for lake whitefish in the southern main basin of Lake Huron, I demonstrate how ecosystem changes that lower growth and recruitment potential are predicted to reduce population productivity and sustainable harvest rates through demographic and plastic mechanisms. By further incorporating an evolutionary component within an eco-genetic model, I show that ecological conditions also affect evolutionary responses in maturation to harvest by altering selective pressures. Finally, using the same eco-genetic model, I provide a much-needed validation of the robustness of the probabilistic maturation reaction norm (PMRN) approach, an approach that is widely used to assess maturation and infer its evolution, to ecological and evolutionary processes experienced by exploited stocks in the wild. These findings together highlight the important role that ecological conditions play, not only in determining fishery yield and sustainability, but also in shaping evolutionary responses to harvest. Future studies evaluating the relative effects of ecological and evolutionary change and how these processes interact in harvested populations, especially with respect to freshwater versus marine ecosystems, could be especially valuable. Author Keywords: Coregonus clupeaformis, density-dependent growth, fisheries-induced evolution, individual-based eco-genetic model, Lake Huron, stock-recruitment
Habitat Characteristics, Density Patterns and Environmental Niches of Indo-Pacific Humpback Dolphins (Sousa chinensis) of the Pearl River Estuary and Eastern Taiwan Strait
The purpose of this thesis is to quantify the habitat characteristics, density patterns and environmental niches of two groups of Indo-Pacific humpback dolphins: Chinese white dolphins (CWD) of the Pearl River estuary (PRE), and Taiwanese white dolphins (TWD, =Taiwanese humpback dolphin, THD) found in the eastern Taiwan Strait (ETS). Much work has already been done on the habitat use of CWDs in parts of the PRE, so the purpose of my first two chapters was to advance knowledge of the TWD to a comparable level. Chapter 2 contains the first published description of the relatively shallow, inshore, estuarine habitat of the TWD. General environmental characteristics and observed group sizes were consistent with other populations of humpback dolphins, and group sizes were not correlated with the environmental variables measured during surveys. Chapter 3 investigated density patterns of TWDs, finding spatiotemporal heterogeneity across the study area. Humpback dolphin densities fluctuated from year to year, but some parts of the study area were consistently used more than others. Environmental characteristics again did not influence dolphin densities, though more dolphins than expected were sighted in waters adjacent to major land reclamations, which may be related to the location of these areas close to major rivers. In Chapter 4, niches of the TWD and CWDs found in the PRE were compared using species distribution models, which indicated significant niche overlap. This may be due to niche conservatism maintaining similar fundamental niches between the two groups since their historical split >10,000 years ago, or a result of the intrinsic biotic factors that influence occurrence data affecting the hypervolume dimensions of each realized niche in similar ways. Geographic predictions indicate that most of the TWD’s range has likely been surveyed, and that there may be connectivity between PRE humpback dolphins and at least one neighbouring putative population due to continuous predicted suitable habitat in waters that remain poorly surveyed. Overall, my thesis demonstrates that density patterns may vary over time, but on a broad temporal scale, these two allopatric groups of Indo-Pacific humpback dolphins have similar habitat requirements in geographically isolated, but environmentally similar locations. Author Keywords: density, habitat, Indo-Pacific humpback dolphin, niche overlap, Sousa chinensis, species distribution model
cis-Cytokinins from the tRNA-degradation pathway impact the phenotype and metabolome of Arabidopsis thaliana
Cis-isomers of the cytokinin plant hormone family are thought to have low activity or impact on plant growth and development. Mutants with independent silencing of the pathway leading to cis-CK (cis-cytokinin) were investigated at the phenotype and metabolite levels. Phenotypic deviations were noted in trichome development, fresh weight, rosette diameter, number of non-rosette leaves, shoot height, delayed flowering, flower number, and carotenoids. Exploratory metabolomic analysis detected a number of metabolite features that have been associated with CK, auxin, and ABA (abscisic acid) activity. Evidence from both phenotype and metabolomic analysis support the hypothesis that cis-CK production is biologically important for plant growth and development. Author Keywords: arabidopsis, cytokinin, IPT, metabolmics
spatial and temporal distribution of tabanid (Chrysops, Hybomitra and Tabanus) species in the Nakina district of northwestern Ontario
This thesis focused on expanding knowledge of Hybomitra, Chrysops and Tabanus (Diptera: Tabanidae) distributions north of Lake Nipigon, Ontario, in a managed boreal forest. As land use and climate changes accelerate, there is increased pressure to increase knowledge from which to monitor changes. In 2011 and 2012, 8928 individuals representing, 44 species were captured using sweep netting. Major northward range extensions were observed for Chrysops shermani, C. aberrans and Tabanus fairchildi. Smaller range extensions and in-fills were observed for another 15 species. 23 species had exntensions to their previously known seasonal range. C. carbonarius was the only species that showed an extension to both sides of its season. In general, harvested stands had 50% more individuals and 30% greater species richness than younger stands. A possible link between stand age and interspecific competition was identified. Information has been provided to build baseline of species richness, relative abundance and distribution of Tabanid flies. Author Keywords: diptera, distribution, natural history, northern Ontario, species range, tabanid
Effect Assessment of Binary Metal Mixtures of Ni, Cu, Zn, and Cd to Daphnia magna
Mixtures of metals occur in surface waters, toxicity of which has drawn world-wide attention due to their crucial role in both ecotoxicology and regulations. The present research was undertaken to study the acute toxicity of binary mixtures of Ni, Cu, Zn, and Cd to the freshwater organism, Daphnia magna. The experimental approach included single and binary metal toxicity tests based on the 48h acute toxicity bioassay of Environment Canada. The acute toxicity of single metals followed the order of Cd > Cu > Zn > Ni. Based on the calculated 48h EC50 value of single metals, a toxic unit (TU) approach was used to combine two metals in a binary mixture, in which 1TU was equal to the 48h EC50 value of a metal in single exposure. The toxicity of binary metal mixtures to D. magna followed the order of Cu-Cd > Cu-Zn > Zn-Cd > Cu-Ni > Zn-Ni > Cd-Ni, which demonstrated three types of toxicity (i.e., less than additive, additive, and greater additive). Predictions from additivity models (including concentration addition (CA) and independent action (IA) models), a generalized linear model (GLM), and a biotic-ligand-like model (BLM-like) were compared to the bioassay results. The CA and the RA models also predicted three types of toxicity of the binary metal mixtures (i.e., less than additive, additive, and greater than additive). However, the CA model mostly overestimated the toxicity of binary mixtures. Predictions from the GLM supported the inclusion of the interaction between two metals in a mixture to predict the toxicity of binary metal mixtures. The binary metal toxicity was also predicted using a BLM-like model based on the calculated concentrations of free ionic forms of the metals, affinity constants, and toxic potency of each metal. In this model, it was hypothesized that the toxicity of metal mixture is the result of competition of metals with Ca2+ at biotic ligands, which can lead to whole-body deficiency of Ca2+ in D. magna. The BLM-like model provided the toxic potency of single metals with the following order, Cu > Cd > Zn > Ni. Although the prediction of the BLM-like model was not in good agreement with the observed toxicity of binary metal mixtures, an overestimation of risk of mixture toxicity was obtained using this model, which could be promising for use in environmental risk assessment. Author Keywords: biotic ligand model, concentration addition, Daphnia magna, independent action, metal toxicity, modeling
Assessing Connectivity of Protected Area Networks and the Role of Private Lands in the United States
Forestalling biodiversity loss through the establishment of protected areas is a universally accepted conservation strategy, yet despite established guidelines for protected area coverage and placement, much of the world is currently failing to meet its commitments to conservation planning and landscape protection. Calls for the United States to protect more land usually focus on the need for strategic selection of land parcels to bolster protected area coverage and network functionality, but to date there lacks focused research on either the role of private protected areas in conservation planning or the factors affecting individual protected area selection and importance. We determined gaps in conservation planning in the contiguous United States by analyzing the connectivity of protected area networks by state, and assessing the importance of private protected areas in improving linkages in protected area connectivity. We found that all states had low coverage from protected areas (average <8.4% of total land mass), and especially private protected areas (average <1.1% of total land mass), and that the overall contribution of such areas to protected area network connectivity also was low. Terrain ruggedness was identified as the main factor affecting the current location of protected areas, and that protected area spatial layout is a primary influence on landscape connectivity. We conclude that establishment of private protected areas could offer a viable conservation tool for increasing protected area coverage and connectivity, but that current efforts are inadequate to either adequately link existing protected areas or to meet established land protection guidelines. Author Keywords: Aichi Target 11, conservation planning, graph theory, network theory, private conservation, protected areas
Influence of Canopy Water Partitioning on the Isotopic Signature of Plant Water in a Mixed Northern Forest
This study seeks to clarify the way in which the differing canopy characteristics among tree species influence the partitioning of precipitation, and therefore the source of water available for plant water uptake, in the Plastic Lake catchment near Dorset, ON. Three dominant tree species were compared: red oak (Quercus rubra), eastern white pine (Pinus strobus), and eastern hemlock (Tsuga canadensis). Above-canopy precipitation, throughfall, stemflow, and soil water content were monitored weekly from June 2016 until October 2016 and the 18O and 2H isotopic signatures of each were analyzed. Plant water and bulk soil water samples were also collected from five trees of each species at five stages of the growing season to compare the isotopic signature of xylem water to that of their surrounding soils. Both plant water and bulk soil water displayed evidence of isotopic fractionation; however, plant water was more depleted in δ2H and δ18O than bulk soil water. Water interacting with the tree canopies as throughfall and stemflow did not display significant evidence of isotopic fractionation. This suggests that the vegetation could have accessed an isotopically distinct source of water stored within the soil or that an unknown isotopic fractionation process occurred throughout this study. Author Keywords:
Changes in Forms of Uranium in Anoxic Lake Sediments and Porewaters Near an Abandoned Uranium Mine, Bancroft, Ontario
Soluble uranium (U) has been observed continuously in the porewaters of Bentley Lake, a lake with semi-permanent anoxic sediments, despite the fact that reduced U(IV) is known to be insoluble. To be able to predict the fate and mobility of U that has been deposited in lake sediments, it is very important to understand the factors that determine soluble uranium in anoxic environments. Understanding soluble U species is crucial for predicting its behavior in natural systems as well as for the development of U remediation schemes. To explore the factors affecting soluble U in natural environments, anoxic lake sediments and porewaters were tested using two analytic methods, ICP-MS and ESI-HR-MS. Reduced uranium (U(IV)) can be precipitated as U(IV)-NdF3. Using this method revealed that most of the uranium in porewater is not able to be co-precipitated with NdF3. In addition, UO2+ was found using ESI-HR-MS, showing uranyl ions exist in reduced porewater. However, the UO2+ might be attached to some organic groups rather than present as free ions. Seasonal variation and air exposure experiments on the mobility of U between sediments and porewater were observed to test for changes of the redox state of U as a function of sample collection and storage. The results of this study will contribute to better remediation strategies for U tailings and will help U mining operations in the future. Author Keywords:

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